Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31360 886 / 0 MED34, ATRECQ2, RECQL2 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) AT1G10930 387 / 2e-119 ATSGS1, RECQL4A ,ATRECQ4A DNA helicase (RECQl4A) (.1) AT1G60930 372 / 8e-114 RECQL4B ,ATRECQ4B RECQ helicase L4B (.1) AT3G05740 323 / 2e-100 RECQI1 RECQ helicase l1 (.1) AT4G35740 316 / 8e-97 ATRECQ3, RECQL3 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) AT1G27880 189 / 8e-50 DEAD/DEAH box RNA helicase family protein (.1) AT5G27680 149 / 7e-37 RECQSIM RECQ helicase SIM (.1) AT1G55150 77 / 1e-14 DEA(D/H)-box RNA helicase family protein (.1) AT3G01540 70 / 5e-12 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT5G63120 68 / 1e-11 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034749 [exp] 956 / 0 AT1G31360 853 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10015467 [exp] 369 / 1e-111 AT1G10930 1288 / 0.0 DNA helicase (RECQl4A) (.1) Lus10042451 [exp] 334 / 1e-104 AT3G05740 814 / 0.0 RECQ helicase l1 (.1) Lus10026219 [exp] 329 / 2e-102 AT3G05740 816 / 0.0 RECQ helicase l1 (.1) Lus10041840 [exp] 284 / 8e-84 AT4G35740 879 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10034434 [exp] 263 / 6e-76 AT1G31360 280 / 2e-82 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10028387 [exp] 228 / 2e-64 AT4G35740 778 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10004503 [exp] 136 / 9e-33 AT5G27680 912 / 0.0 RECQ helicase SIM (.1) Lus10036983 [exp] 127 / 7e-30 AT1G27880 344 / 7e-106 DEAD/DEAH box RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G104300 [exp] 956 / 0 AT1G31360 986 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.003G015800 [exp] 366 / 2e-111 AT1G10930 1329 / 0.0 DNA helicase (RECQl4A) (.1) Potri.005G019800 [exp] 329 / 7e-103 AT3G05740 828 / 0.0 RECQ helicase l1 (.1) Potri.005G107400 [exp] 310 / 3e-94 AT4G35740 850 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Potri.013G161200 [exp] 266 / 7e-77 AT1G31360 310 / 2e-93 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.010G056500 [exp] 190 / 2e-50 AT1G27880 935 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Potri.005G026400 [exp] 142 / 1e-34 AT5G27680 875 / 0.0 RECQ helicase SIM (.1) Potri.003G038300 [exp] 74 / 1e-13 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.012G084600 [exp] 69 / 1e-11 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.015G083000 [exp] 69 / 1e-11 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0426 [flax] [poplar] HRDC-like PF00570 [flax] [poplar] HRDC HRDC domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0123 [flax] [poplar] HTH PF09382 [flax] [poplar] RQC RQC domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10033289 pacid=23172221 polypeptide=Lus10033289 locus=Lus10033289.g ID=Lus10033289.BGIv1.0 annot-version=v1.0 ATGGAGAATGAGGAATTGATATTGGAAGAGCTTCTCACCGTCGAAGCTGAAATTCAAGACGTTCAAGGCCAGATAAAGGCGCTGTTTGACAGGCAAGAGA AGTTGGAGGAGAGGCAGTCTGACCTCAGAGATTTGCTAGAAGCATGTCAAGCTTCCGGAAGCCCTGCTCATGGCTGCCAAGCTACGACTTCGGAAAATTG GTCCGGTTCATTTGAGTGGGATTCCCAGGCTGAAGATGTTAGGCTCAATGTTTTCGGGATATCTTCGTACCGTGCGAATCAGCGTGAGATGAGCTATAGC TTGCTACATCCTCTCATTTGCTTACCAGATGTGAGATGTTACTGTTCCAGTGTCCTTCCCTACTGCCGCATCAAGTGCAAAAAAGCTATCTTGTGGGTTG CTTATAGCAAACTAGTTGTTCTGGTTGAAGATGGATACTCTTGTGATCGTTCTCCATTCGCCTATCGATGTGGAATTGTAAATGCTGTGATGAGTGGAAA AGATGTTTTAGTGATCATGGCTGCTGGCGGTGGGAAAAGCCTTTGTTATCAGCTTCCAGCTATGCTTCGGAATGGGGTTGCCCTTGTTGTCAGTCCTTTA CTTTCTTTAATTCAAGACCAGGTGATGGGACTGACTGCATTAGGGATTCCTGCATTCATGTTGACATCAAGCACTAACAAGGAAGAAGAGAAGTTCATAT ATAAAGCTCTAGAAAAGGGTGAAGGAGAGCTCAAGATATTGTATGTTACTCCTGAAAAAATATCGAAGAGTAAAAGGTTTATGTCAAAGCTTGAAAAGTG TAATCATCAAGGTCGTCTCACTCTAGTTGCAATTGATGAGGCCCATTGCTGTAGTCAGTGGGGGCATGATTTCCGTCCTGACTACAAGAGCCTTGGAATC CTCAAGACTCAGTTTCCTAGTGTTCCTGTCGTGGCGTTGACTGCAACAGCCACTCAGAAAGTCCAATATGATTTAATGGAGATGCTGCATATTCCAAAAA GTGTCAAGTTTGTTAGCACAGTCAACAGACCAAACCTTTTTTATAAGGTACGAGAGAAGTCCTCTGTTGCCAGAGAGGTGATTGATGAAATTGCTGAATT CATTCACGAGTCTTACTCAAACAATGAGTCTGGTATTGTCTATTGCTTCTCACGGAAGGAATGCGAACAGGTTGCTGCAGAATTACGTACACGGGGAATT TCAGCTGAGTACTACCATGCATACATGGATCCCGATTCACGTGACAAAGTGCATATGAGGTGGAGCAAGAATAAGTTGCAGGTTATTGTTGGCACGGTAG CATTCGGTATGGGAATCAACAAACCTGATGTTAGGTTTGTTATACATCACAGCTTGAGCAAATCAATGGAGACATATTACCAGGAGAGTGGTAGAGCTGG ACGAGATGGGCTACCTTCAGAATGTCTAATATTTTTCAGATCTGGTGATGTTCCAAGGCAGAGCTCGATGGTCTTCTACGAGAATTCTGGACTGCAGAAT CTCTATGATATAGTACGATATTGCCAGTCGAAAAGGCAGTGTCGTCGAGCTGCATTCTTTCGACATTTTAGTGAGCCACTGCAGGACTGTAATGGGATGT GTGATAACTGTGCCTTTTTGAATGAGATTATAGAAGTTGATGTTTCCAATTATGCAGTTGCTTTTGTCTCTTTGCTGAAAAATGCAATGGAGAACGATCA AAGGTTAACGATGCTACAATTATTAGACAAAATGAAACCCAAGCATAAGGAACTAGGATCTACCTTAAAAAAGGAGGAAATGGAGCAGCTTGTAGTACAG CTTGTACTTGATCGAGTTCTGAAAGAAGAATTTCAGCATACTCCATATGCTACAAATGCGTATGTCACGGTTGGACCATTGGCAAATCAAGTGCTGCAAG GGAAGAAGGCTGTCAAGATTGAGACTTGTAGCAAACAGAAGATCAAGTCTGGAGATATGAGATCAGTGAAACACAGATTGTCAGGGTTAGAGTCCAAACT TGATGAGCTGCGGAAAGATCTCTCTTCGAATCATGGTGGGATATTCCCTCATTCTGTGCTGTCCAGTCAGCAGATGAGCATGATCAGCTCCCAAATGCCC AACTCAATGGAAAAGTTGGAGAAGATAATTGGAAAACTGAAAGCTGACAAGTACGGGGACAGGATTCTGGAAGAGGTTAAGAATTATGGAGGTTCCGAAG AGGAACCTGAAAGCTCAACATTGAAGGATGAAGCAAGCGGTGATAAGAGGGCTAGTAAGAGACAGAAGACCAGAAAGAATGTGGTGGTCGTTGATAGCGA GGAAGACGAGCCATGA
AA sequence Show only first row Show all	>Lus10033289 pacid=23172221 polypeptide=Lus10033289 locus=Lus10033289.g ID=Lus10033289.BGIv1.0 annot-version=v1.0 MENEELILEELLTVEAEIQDVQGQIKALFDRQEKLEERQSDLRDLLEACQASGSPAHGCQATTSENWSGSFEWDSQAEDVRLNVFGISSYRANQREMSYS LLHPLICLPDVRCYCSSVLPYCRIKCKKAILWVAYSKLVVLVEDGYSCDRSPFAYRCGIVNAVMSGKDVLVIMAAGGGKSLCYQLPAMLRNGVALVVSPL LSLIQDQVMGLTALGIPAFMLTSSTNKEEEKFIYKALEKGEGELKILYVTPEKISKSKRFMSKLEKCNHQGRLTLVAIDEAHCCSQWGHDFRPDYKSLGI LKTQFPSVPVVALTATATQKVQYDLMEMLHIPKSVKFVSTVNRPNLFYKVREKSSVAREVIDEIAEFIHESYSNNESGIVYCFSRKECEQVAAELRTRGI SAEYYHAYMDPDSRDKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLIFFRSGDVPRQSSMVFYENSGLQN LYDIVRYCQSKRQCRRAAFFRHFSEPLQDCNGMCDNCAFLNEIIEVDVSNYAVAFVSLLKNAMENDQRLTMLQLLDKMKPKHKELGSTLKKEEMEQLVVQ LVLDRVLKEEFQHTPYATNAYVTVGPLANQVLQGKKAVKIETCSKQKIKSGDMRSVKHRLSGLESKLDELRKDLSSNHGGIFPHSVLSSQQMSMISSQMP NSMEKLEKIIGKLKADKYGDRILEEVKNYGGSEEEPESSTLKDEASGDKRASKRQKTRKNVVVVDSEEDEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Lus10033289 [exp]	0	1
AT4G32000			Protein kinase superfamily pro...		Lus10001939 [exp]	3.5	0.8285
AT3G08800		SIEL	SHORT-ROOT interacting embryon...		Lus10012221 [exp]	5.3	0.8356
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10029109 [exp]	10.4	0.8379
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012871 [exp]	10.8	0.8458
AT1G06260			Cysteine proteinases superfami...		Lus10017674 [exp]	11.8	0.8020
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10042765 [exp]	12.1	0.8559
AT2G36310		NSH1, URH1	nucleoside hydrolase 1, uridin...		Lus10035601 [exp]	16.2	0.8286
AT5G41130			Esterase/lipase/thioesterase f...		Lus10041529 [exp]	18.2	0.7425
AT3G59090			unknown protein		Lus10004930 [exp]	18.2	0.8452
AT1G60010			unknown protein		Lus10010708 [exp]	20.5	0.8424

Compare expression of checked genes

Lus10033289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.