Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45620 557 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G35140 409 / 2e-139 Transducin/WD40 repeat-like superfamily protein (.1) AT4G38480 407 / 7e-139 Transducin/WD40 repeat-like superfamily protein (.1) AT5G10940 160 / 3e-42 ASG2 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) AT2G43770 67 / 7e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 62 / 3e-10 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G43920 57 / 1e-08 transducin family protein / WD-40 repeat family protein (.1) AT2G21390 54 / 2e-07 Coatomer, alpha subunit (.1) AT1G53090 53 / 4e-07 SPA4 SPA1-related 4 (.1.2) AT1G62020 53 / 4e-07 Coatomer, alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034751 [exp] 948 / 0 AT3G45620 556 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10025088 [exp] 438 / 9e-151 AT4G35140 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10023993 [exp] 434 / 4e-149 AT4G35140 557 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10040538 [exp] 87 / 2e-19 AT5G10940 291 / 7e-95 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Lus10012230 [exp] 69 / 2e-12 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 69 / 2e-12 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 67 / 5e-12 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 66 / 1e-11 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10040537 [exp] 61 / 5e-11 AT5G10940 219 / 3e-68 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G139000 [exp] 414 / 3e-141 AT4G35140 602 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G178700 [exp] 408 / 5e-139 AT4G35140 538 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G158300 [exp] 149 / 1e-38 AT5G10940 1080 / 0.0 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G103132 [exp] 121 / 2e-31 AT5G10940 390 / 2e-132 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G103066 [exp] 75 / 2e-15 AT5G10940 209 / 4e-64 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Potri.019G096900 [exp] 67 / 6e-12 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G194100 [exp] 65 / 6e-11 AT5G43920 697 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.007G009500 [exp] 57 / 1e-08 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 56 / 2e-08 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G055800 [exp] 55 / 1e-07 AT5G08560 716 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10033290 pacid=23172076 polypeptide=Lus10033290 locus=Lus10033290.g ID=Lus10033290.BGIv1.0 annot-version=v1.0 ATGGAAATGGAGACTCCTCGAAAGAAAATCAAAGTCGGATTCGACGAGATCTTCAGACGAGAAGTGGGTTTGTCCTCCCCCAAATACTTTTCTCGCTGCT TCTCTGGTTCTGAGGTCCTTGTGAAACAAATTGATCTTCACGGGAAGTTGGTTGGTCATGATGGATGTGTTAATGCTATTCAGTTCAACTCCACTGGGGA TCTTCTCATATCTGGTTCCGATGACAGACAAGTCATATTCTGGGATTGGGCAACCCAAAAGAAGAAGATGTCATATGATTCTGGTCACTCGGACAATATA TTCCAGACTAAAATCATGCCTCTCACTGATGATCAGACAATAGTTACTTCCTCTGCTGATGGACAGGTTCGGCTAGGCCAGGTAACAGGAGATGGCACTG TGGATACAAAGAGGCTGGGGGAACATGAGGGGCGTGCGCATAACCTTGCTGTGGAGCCAGGAAGTCCTCACATACTATATAGCTGCGGTGAAGATGGCGT TGTGCAACATTTTGATCTTCGTAGTGCTTCTTGCACAAAGCTCTTTTGCTGCTCCCAGCTGAGAGAGACTGGCAAACAGAATCTGAAGAAGATCAGGTTA AATGCAATTGTTATTGATCCAAGGAAACCAAATTATTTCAGCATAGGAGGTTCTGATGAATATGCTCGTGTATATGATGTAAGAAAATGTCGATGGAATT CATCTAGCAATGGTGACTCGCCTATTGATACCTTGTGTCCCAGTCACTTGATCAAGAACAACAGCGTGCATATAACTGCATTGGCTTACTCCAACTCCAG TGAACTTCTTGTCTCTTACAATGATGAACTTATTTATTTATTCCAAAAGAACATGGGGATGGGTCCAAATCCATCCTCTTTGTCAGCACAAGAGTTGCAG AAACTTGAAGGGCCACATGTCTACATGGGACACAGGAATTCACAGACAGTTAAAGGGGTCAGTTTCTTGGGCCTGAATGACGAGTATGTGGCAACGGGAT CTGATTGTGGTCACATATTTATCTGGAAGAAGCAGGATTCAAGGCTTGTTCGAGTAATGTTTGGCGATCGCCACGTAGTTAACCAAATTGAGCCGCATCC TTGTATGCCTATGTTTGCAAGTTGTGGGATAGAGAAGACTGTTAAGCTCTGGGTTCCCAGCACATCTGGATCTCCTCCGTTACCAGAAAACATAGAAAAG ATTATGGAGTCGAACAAGCAGGGTAGGGAAGACCATTCGCAGGTATACCTGACTCCAGATGTGATAATGAGGATATTGAGGCTGCAGAGGAATGAAGCAG TGGCATATTTCGAGAGCAGGTTTGATGTTGAGGACAGTGGTGGATATGTTGTAGGTTTCCCAGAGGCAGAAGCATCTTCTGCTGAAGATCCTAGGGAATG CAACATTAGTTGA
AA sequence Show only first row Show all	>Lus10033290 pacid=23172076 polypeptide=Lus10033290 locus=Lus10033290.g ID=Lus10033290.BGIv1.0 annot-version=v1.0 MEMETPRKKIKVGFDEIFRREVGLSSPKYFSRCFSGSEVLVKQIDLHGKLVGHDGCVNAIQFNSTGDLLISGSDDRQVIFWDWATQKKKMSYDSGHSDNI FQTKIMPLTDDQTIVTSSADGQVRLGQVTGDGTVDTKRLGEHEGRAHNLAVEPGSPHILYSCGEDGVVQHFDLRSASCTKLFCCSQLRETGKQNLKKIRL NAIVIDPRKPNYFSIGGSDEYARVYDVRKCRWNSSSNGDSPIDTLCPSHLIKNNSVHITALAYSNSSELLVSYNDELIYLFQKNMGMGPNPSSLSAQELQ KLEGPHVYMGHRNSQTVKGVSFLGLNDEYVATGSDCGHIFIWKKQDSRLVRVMFGDRHVVNQIEPHPCMPMFASCGIEKTVKLWVPSTSGSPPLPENIEK IMESNKQGREDHSQVYLTPDVIMRILRLQRNEAVAYFESRFDVEDSGGYVVGFPEAEASSAEDPRECNIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45620			Transducin/WD40 repeat-like su...		Lus10033290 [exp]	0	1
AT5G01450			RING/U-box superfamily protein...		Lus10002487 [exp]	1.4	0.8933
AT4G08790			Nitrilase/cyanide hydratase an...		Lus10001975 [exp]	2.0	0.8733
AT3G45620			Transducin/WD40 repeat-like su...		Lus10034751 [exp]	2.0	0.8913
AT5G19430			RING/U-box superfamily protein...		Lus10009695 [exp]	5.7	0.8381
AT5G61670			unknown protein		Lus10016713 [exp]	7.1	0.8718
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10030160 [exp]	8.8	0.8685
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10009232 [exp]	9.5	0.8597
AT5G53350		CLPX	CLP protease regulatory subuni...		Lus10036701 [exp]	9.6	0.8837
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Lus10034851 [exp]	10.0	0.7743
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10012702 [exp]	10.9	0.8666

Compare expression of checked genes

Lus10033290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.