Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31420 732 / 0 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT2G35620 721 / 0 FEI2 FEI 2, Leucine-rich repeat protein kinase family protein (.1.2) AT1G31410 578 / 0 putrescine-binding periplasmic protein-related (.1) AT5G62710 483 / 5e-159 Leucine-rich repeat protein kinase family protein (.1) AT1G78530 281 / 6e-86 Protein kinase superfamily protein (.1) AT5G07280 300 / 2e-85 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G62230 292 / 3e-84 ERL1 ERECTA-like 1 (.1.2) AT5G07180 291 / 2e-83 ERL2 ERECTA-like 2 (.1) AT1G71830 283 / 3e-83 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT4G33430 280 / 3e-82 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034753 [exp] 930 / 0 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Lus10033104 [exp] 494 / 3e-163 AT5G62710 934 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036672 [exp] 493 / 1e-162 AT5G62710 936 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034739 [exp] 480 / 4e-162 AT1G31420 406 / 3e-139 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Lus10034754 [exp] 435 / 9e-146 AT1G31410 187 / 6e-56 putrescine-binding periplasmic protein-related (.1) Lus10031689 [exp] 290 / 8e-83 AT5G62230 1437 / 0.0 ERECTA-like 1 (.1.2) Lus10031108 [exp] 286 / 2e-81 AT5G62230 1422 / 0.0 ERECTA-like 1 (.1.2) Lus10000629 [exp] 274 / 2e-80 AT5G10290 914 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10034350 [exp] 273 / 1e-79 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G105000 [exp] 793 / 0 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G129000 [exp] 791 / 0 AT1G31420 928 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G105100 [exp] 632 / 0 AT1G31410 585 / 0.0 putrescine-binding periplasmic protein-related (.1) Potri.012G071100 [exp] 488 / 3e-161 AT5G62710 943 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G130400 [exp] 300 / 2e-86 AT5G62230 1412 / 0.0 ERECTA-like 1 (.1.2) Potri.007G082400 [exp] 289 / 1e-85 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.005G083300 [exp] 288 / 3e-85 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.015G132200 [exp] 294 / 3e-84 AT5G62230 1404 / 0.0 ERECTA-like 1 (.1.2) Potri.001G380800 [exp] 276 / 6e-84 AT1G78530 535 / 0.0 Protein kinase superfamily protein (.1) Potri.003G074000 [exp] 292 / 5e-83 AT1G72300 1215 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033291 pacid=23172073 polypeptide=Lus10033291 locus=Lus10033291.g ID=Lus10033291.BGIv1.0 annot-version=v1.0 ATGAAATCAATCTCCACAGTCTCACTCTGCACTTCTGCGCTCCCTCCTCAATTTGGAAACCCTAAAGCCACAGTCTCATCTTCCTCTTCCCGTTCCCATT TCCATTTCCTGCAGGCCAATTCTCCCTCTCGCGTCGTATTCCTACCTTTCCTCCGCCACCGGAGAACAGTTCCGCTTGCCGTCTCCGATCGCCGGGGCGA AGATCCTCCTCCTGCATCTTCGCTTCCGACTGTCGCCGTATCGGTTTCTTATGTTGTTGCTGCAGCTGCTCTAATATTGCTCCGTTTTTCCGGAGTTCCC GCATGTCCTGCTGCCGTCGCGCGGCCTCTCCCTGCTGTTTCTGTGCAAAATGATTCAGTTCATACGGATGCGACATCTGAGAATGTGGAGAGCGTTGACG GTGATGAGGAGCTTGAAGCTGCATTCAACGCTTGGAAATCAAAGACATTTGCTCTTTCTGTTCCTCTACGCATTGTTGCTCTCCGTGGCTCCGTTCCTCC TTCTTGGATCAAGGATTTCGTCCAGTCTCAGGGCAAGAGATTAAAGTTCAACACCAAGTTTGTCACAAGTCTGGAGGACATATTTTCTGATCTATCCTTA CCAATGAACAAACGCAAAGTAGCTCCAAGTTCTACTGTGGCTGCTGATATAGTCAGTGTTGGTGACTCGTGGCTCAGTTATGCGATTAAAAGGTCTATGG TTGAGCCTATGAAAGGGGTGGAGGACCAGGATTGGTATAAGGGCTTGAATGAGAAATGGAAGGTATATGTCCGCAGGAATCATCAGGGTGAATTAGATCC TAAAGGTGAGATATGGGCTGCACCATATCGGTGGGGTGGCATGGTTATAGCATACAAGAAAAGCAAATTTCGACAGCATAAGTTGGCTCCAATAGAGGAT TGGGCAGATTTATGGCGGCCGGAGCTTGCCGGTAAGATTGCAATGGTTGATTCTCCTCGAGAGGTCATTGGTTCTGTCTTAAAATACATGGGAGCGTCCT ACAACACAAAAGACATGGACTCGCAAATCCCTGGAGGGAGGAATGCAGTGCTGCAGAATCTGGCATCACTGACAAAACAGGTGCGACTCTTTGACAGCAC CCACCATCTAAAAGCGTTTGGAGTTGGAGATGTATGGGTGGCAGTTGGGTGGAGCAGTGATGTTCTTCCTGTGGCAAAGCGTATGTCCAATGTTGCAGTT ATTGTTCCCAAGTCTGGAACTAGCTTATGGGCGGATCTGTGGGCAATCCCTTCCACGTCCGGGTTGGAAACAAAGGAGCAGCTTGGTGGGCGAGTGAGAG GACCTTCTCCGCTAGTTCATCAGTGGATAGAGTTCTGTCTGCAAAATGAAAGAGCATTGCCCTTCAAACAGGAGGTGATCCCCGGATCAATCCCGTCCGC CCTAGACAGCAGCAGTCATACTGGAGTGGTGCCTAAAGAGTTGATCAAAGGTAAACCAAAAATGGAGACGAATCTGATTGATGGAGCGCCTCCTCCTGGG ATCTTGAGTAAAAGCGAATTCTTGGAACCGCTTTCAGAAGCTGCAGTCTCGGATTACAAGTGGCTTATAGGTAGTATGCAGAGGAATGAGAATGGCCCTC TTGGTGAGGCACTTTTAAGTTTCAAAAATTCTATTGTTCGTTCAGACGCAGTACTTCCCCGATGGAGGCCAGAGGATTCCGACCCATGTGGTTGGAATGG TGTGACTTGTGATCGAATAACCAAGAGAGTGGTGTATTTGAGTCTGAAGGACCGCAGGTTGAGTGGACCTATATCAGCTGACCTCGGGAAGCTAGACCAT TTGAAGATTCTTGCTCTATATAACAATAACTTCTATGGAAATATACCTTCTGACTTGGGAAACTGCAGTGAGTTGCAGGGAATATACTTGCAAGGTAACT ACTTGAGTGGAGTTGTTCCAGGTGAACTGGGAAACCTATCTGACCTTCAGTTTCTTGATATCTCAAGTAACTCACTCAGTGGATCTATTCCCCCATCGCT TGGGAAACTAAGCAAACTTGTTAATTTCAATGTCTCCAACAACTTTCTCACTGGACCAATACCATCTGAGGGTTCACTCACCCAATTTCCAGACAGCTCG TTTGCTGGAAATAAGGACTTGTGTGGGAGACAGATCAGTGTAGCTTGTAAAGATGATAGCAGGTCATCAAACAGTTCTTCTGGGTCTGGGTCAGCTCTAA TTCCAGGAGGCAAGAAGAGATATCCTGCAAGGTTGATTGTCAGCGCTTTTGCAACCATTGGTGCTCTGCTTCTTGTGGCACTCATGTGCTTTTGGGGTTG TTTTCTATACAAGAAGTTTGGTAGAAATGAAAGTAGCAGTGTTGCAATGGATGTTAGTGGAGGTGCATCAATTGTAATGTTTCATGGAGACTTGCCATAC TCTTCCAAAGACATTATTAAGAAGTTGGAGACCTTGACGGAGGGGCATGTGATAGGTTGTGGAGGCTTTGGGACAGTGTACAAACTGGCAATGGATGATG GCAATGTGTTTGCTTTGAAGAGAATCGTGAAGATGAATGAAGGGTTTGATCGCTTCTTTGAGAGGGAGCTTGAAATTCTTGGGAGCATAAAACACAGATA CCTAGTGAATTTGCGAGGATATTGTAATTCTCCAACATCTAAATTGTTGATCTATGACTATTTACCGGGTGGAAGTCTTGATGAAGTGCTCCATGAAAAA ACTGAACAACTTGACTGGGATGCACGCCTCAATATTATTGTCGGAGCTGCAAAGGGGCTTGCATACCTGCATCATGATTGTTCCCCTAGAATCATACACC GTGATATAAAATCAAGCAATATTCTACTTGATGGCAATTTAGCAGCTCGAGTGTCTGACTTCGGGCTTGCTAAATTGCTAGAAGATGAAGAATCACACAT CACAACCATTGTTGCTGGAACTTTTGGTTACTTGGCCCCTGAGTACATGCAAAGTGGTAGAGCGACAGAAAAGACTGATGTATATAGCTTTGGCGTCCTG GTGCTTGAAGTAATAAGTGGAAAGCGACCAACAGATGCATCTTTCATTGAGAAGGGTCTCAATATTGTTGGTTGGGTAGGTATCTTAACATTCTTACGAT AG
AA sequence Show only first row Show all	>Lus10033291 pacid=23172073 polypeptide=Lus10033291 locus=Lus10033291.g ID=Lus10033291.BGIv1.0 annot-version=v1.0 MKSISTVSLCTSALPPQFGNPKATVSSSSSRSHFHFLQANSPSRVVFLPFLRHRRTVPLAVSDRRGEDPPPASSLPTVAVSVSYVVAAAALILLRFSGVP ACPAAVARPLPAVSVQNDSVHTDATSENVESVDGDEELEAAFNAWKSKTFALSVPLRIVALRGSVPPSWIKDFVQSQGKRLKFNTKFVTSLEDIFSDLSL PMNKRKVAPSSTVAADIVSVGDSWLSYAIKRSMVEPMKGVEDQDWYKGLNEKWKVYVRRNHQGELDPKGEIWAAPYRWGGMVIAYKKSKFRQHKLAPIED WADLWRPELAGKIAMVDSPREVIGSVLKYMGASYNTKDMDSQIPGGRNAVLQNLASLTKQVRLFDSTHHLKAFGVGDVWVAVGWSSDVLPVAKRMSNVAV IVPKSGTSLWADLWAIPSTSGLETKEQLGGRVRGPSPLVHQWIEFCLQNERALPFKQEVIPGSIPSALDSSSHTGVVPKELIKGKPKMETNLIDGAPPPG ILSKSEFLEPLSEAAVSDYKWLIGSMQRNENGPLGEALLSFKNSIVRSDAVLPRWRPEDSDPCGWNGVTCDRITKRVVYLSLKDRRLSGPISADLGKLDH LKILALYNNNFYGNIPSDLGNCSELQGIYLQGNYLSGVVPGELGNLSDLQFLDISSNSLSGSIPPSLGKLSKLVNFNVSNNFLTGPIPSEGSLTQFPDSS FAGNKDLCGRQISVACKDDSRSSNSSSGSGSALIPGGKKRYPARLIVSAFATIGALLLVALMCFWGCFLYKKFGRNESSSVAMDVSGGASIVMFHGDLPY SSKDIIKKLETLTEGHVIGCGGFGTVYKLAMDDGNVFALKRIVKMNEGFDRFFERELEILGSIKHRYLVNLRGYCNSPTSKLLIYDYLPGGSLDEVLHEK TEQLDWDARLNIIVGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLAARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVL VLEVISGKRPTDASFIEKGLNIVGWVGILTFLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10033291 [exp]	0	1
AT1G60990			Glycine cleavage T-protein fam...		Lus10012692 [exp]	2.0	0.8452
AT5G45030			Trypsin family protein (.1.2)		Lus10038347 [exp]	2.4	0.8304
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10041855 [exp]	2.8	0.8474
AT3G53850			Uncharacterised protein family...		Lus10010881 [exp]	3.2	0.7964
AT5G22930			Protein of unknown function (D...		Lus10037944 [exp]	4.0	0.8001
AT1G22790			unknown protein		Lus10028691 [exp]	4.9	0.8123
AT2G44770			ELMO/CED-12 family protein (.1...		Lus10024285 [exp]	6.0	0.8227
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Lus10039618 [exp]	9.0	0.7966
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Lus10029536 [exp]	9.5	0.8212
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Lus10006491 [exp]	11.8	0.7778

Compare expression of checked genes

Lus10033291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.