Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31440 432 / 4e-150 SH3 domain-containing protein (.1) AT4G34660 325 / 6e-109 SH3 domain-containing protein (.1.2.3) AT4G18060 300 / 2e-99 SH3 domain-containing protein (.1) AT4G39020 74 / 2e-15 SH3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034755 [exp] 763 / 0 AT1G31440 397 / 1e-135 SH3 domain-containing protein (.1) Lus10028783 [exp] 312 / 5e-104 AT4G34660 596 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10017501 [exp] 308 / 2e-102 AT4G34660 598 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10015253 [exp] 307 / 2e-102 AT4G18060 540 / 0.0 SH3 domain-containing protein (.1) Lus10017500 [exp] 296 / 8e-98 AT4G34660 569 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10004584 [exp] 291 / 5e-96 AT4G18060 549 / 0.0 SH3 domain-containing protein (.1) Lus10028784 [exp] 291 / 1e-95 AT4G34660 563 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10011975 [exp] 281 / 4e-92 AT4G18060 548 / 0.0 SH3 domain-containing protein (.1) Lus10028785 [exp] 170 / 1e-50 AT4G34660 338 / 2e-117 SH3 domain-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G128800 [exp] 516 / 0 AT4G34660 362 / 6e-124 SH3 domain-containing protein (.1.2.3) Potri.003G105200 [exp] 498 / 2e-177 AT4G34660 325 / 1e-109 SH3 domain-containing protein (.1.2.3) Potri.004G161300 [exp] 324 / 1e-108 AT4G34660 515 / 0.0 SH3 domain-containing protein (.1.2.3) Potri.009G123200 [exp] 320 / 2e-107 AT4G34660 566 / 0.0 SH3 domain-containing protein (.1.2.3) Potri.001G354700 [exp] 289 / 3e-95 AT4G18060 538 / 0.0 SH3 domain-containing protein (.1) Potri.011G077500 [exp] 283 / 8e-93 AT4G18060 514 / 0.0 SH3 domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0010 [flax] [poplar] SH3 PF07653 [flax] [poplar] SH3_2 Variant SH3 domain
Representative CDS sequence Show only first row Show all	>Lus10033292 pacid=23172187 polypeptide=Lus10033292 locus=Lus10033292.g ID=Lus10033292.BGIv1.0 annot-version=v1.0 ATGGAAGCATTCAAGAAGCAAGCTGCTAAGCTCAGGGACCAAGTTGCCAAGCAACAGCAGGCAGTAATGAAACATTTGGGGCATTTTGGCCATGACTCTG TTGTTCTCGATGAGGCCGAGCAGCAATGCTACAAACAGCTTCAAAATCTTTACAATTCTACAAGGGCAGCTAAGCATTTACAGAAGAATATAGTCCGTGG AGTTGAAGGTTACATATCTGTGGGTTTGAAGCAAATGGACATAGCAAGAAAGTTGGCCGCTGACTGTAGCAAATACGGAGGTGAAGGACAATGCACTGAT CCTCATGTTTCCAAGGCTGTTAGTGAATTTGGTAACTCACACACTTTAATGGAGGATGAAGCAGAAACGTTGCTTGGGGTCCTTAGTGGTCAGGTTTCTG AGCCGATTCGGGCATTAATCACTGGGGCACCTTTGGAGGATGCCCGTCACTTGGTTCATCGGTATGACAAGCTTCGCCAGGAAGTTGAGGCTCAGGCAGC TGATGTAATGAGGCGCCGCTCAAAGACTAAGGACTCCGATATAACTGCAGAGAATAGCATGAAGCTGCGGTCTGCTGAAAATAGGTTGACTGAGCTCAAA TCTAGTATGGTTGCACTTGGAAGGGAAGCAGCTGATGCCATGTTATCAGTTGAAAATCAACAACAAGAGATCACAACACAGCGGCTCTTTGCCATGGTGG ATGCAGAGAGATGCTATCATCGACATGTTCTTGCTACATTAGAGAAGCTATATGCTGAGATGATTTCGGAGGAGCAACTGTACGAGTCCACATCACAAAC AAAAACCATAGAGAAAGACATGAATGTCCCATCTCAACAACAGAAAGATGCGAATGCCCCGCCTCGACAAGAGAAAGACGCGAATGCCCTGCCTCGACAA GAGAAAGATACGAATGCCCCGCCTCGACAGGAGTATACTATTACTAACGGAACAGATGATACTAGCCCAAAGGATGCACTTTTTATAGCAAAGGTTGTGC ACCAATTTGATGCTCAAGCGGAAGGGGAGTTAAATCTATCCATTGATGATTATGTCATAGTTCGGCAGGTGGCCTCTACGGGGTGGTCGGAAGGAGAATG CAGAGGGAAAGCTGGATGGTTCCCTTCTGCATACGTCGAGAAAGATGAGAAAGCACCAGCAAACTTGCTGTTGGAAAGAGGCTCACCAAAGTCTTGA
AA sequence Show only first row Show all	>Lus10033292 pacid=23172187 polypeptide=Lus10033292 locus=Lus10033292.g ID=Lus10033292.BGIv1.0 annot-version=v1.0 MEAFKKQAAKLRDQVAKQQQAVMKHLGHFGHDSVVLDEAEQQCYKQLQNLYNSTRAAKHLQKNIVRGVEGYISVGLKQMDIARKLAADCSKYGGEGQCTD PHVSKAVSEFGNSHTLMEDEAETLLGVLSGQVSEPIRALITGAPLEDARHLVHRYDKLRQEVEAQAADVMRRRSKTKDSDITAENSMKLRSAENRLTELK SSMVALGREAADAMLSVENQQQEITTQRLFAMVDAERCYHRHVLATLEKLYAEMISEEQLYESTSQTKTIEKDMNVPSQQQKDANAPPRQEKDANALPRQ EKDTNAPPRQEYTITNGTDDTSPKDALFIAKVVHQFDAQAEGELNLSIDDYVIVRQVASTGWSEGECRGKAGWFPSAYVEKDEKAPANLLLERGSPKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31440			SH3 domain-containing protein ...		Lus10033292 [exp]	0	1
AT2G44500			O-fucosyltransferase family pr...		Lus10003914 [exp]	4.9	0.7613
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10001951 [exp]	6.9	0.7701
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Lus10038095 [exp]	9.2	0.7786
AT1G31440			SH3 domain-containing protein ...		Lus10034755 [exp]	9.8	0.7030
AT2G36810			ARM repeat superfamily protein...		Lus10014405 [exp]	10.5	0.7747
AT1G59650		CW14	Protein of unknown function (D...		Lus10039463 [exp]	13.5	0.7831
AT3G28430			unknown protein		Lus10011235 [exp]	13.8	0.7864
AT4G13350		NIG	NSP (nuclear shuttle protein)-...		Lus10017729 [exp]	13.8	0.7502
AT5G67620			unknown protein		Lus10011549 [exp]	14.0	0.7399
AT5G03330			Cysteine proteinases superfami...		Lus10001404 [exp]	16.2	0.6708

Compare expression of checked genes

Lus10033292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.