Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31460 91 / 4e-21 unknown protein AT1G23270 74 / 9e-16 unknown protein AT2G41342 51 / 1e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034756 [exp] 437 / 5e-156 AT1G31460 131 / 3e-36 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G128600 [exp] 114 / 1e-29 AT1G31460 90 / 2e-20 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033293 pacid=23172137 polypeptide=Lus10033293 locus=Lus10033293.g ID=Lus10033293.BGIv1.0 annot-version=v1.0 ATGGCGGACTTCGGCTTTGGAACCCTCTCCGACACCGACGACTCCGCCGTCGACGAACTCATCTCCCAGACCAAGGACCTCTGCGTCCTCGAACAAGTCT CCAAAATCAACTGCTCCAGCTTCAACGACTCTCTCCTCCCTTCCGACTTGGACACCCGCTTCCGGAAGCTCAAATCTCTCCCCGTCTCCCGAACCAGATC CCCCGCCGCCCCCGCCGCTAATGATTATCCTACCAAGCCTAAATCTCTCTCCAAATCGAAGAGCGATCTGCATCATTGTCTCTCTGTTCCCGGTGAAAAA CTTGGAAGTGTAAAAACAGAGCAGGACAAAGTAATTGGTGAAGAGGATTTTCCGGACACTCCGAACGAGAAATCGAAGCGTGAGTATGTTTCCGATTCGT CTTCCGACTCAGATGTCGTTTTTGCTGAAGAGAAGGTCGAGATGACGAGGAAGAAGAGTTCTTCCAATTCGATACTGAAATCGAAATCAAAGCTGCCATT CGTCGTCGGTTCTCCTTTGGGGCTATCCAACTCTTCCAGGGATGAGTCGCCTTCTCCACCAAGGAAACCGGGGTGCTTTTGGTGTTCTCCGAAGAAGACT GCCAGGAGGAGAAAGAGCAAAGAGAATTGGGAGTTTGATTGGGGAAGCAGCTATGGAGGAGACGACCTGTTGTCTGATCTCGGGACGTTTTCTGTGAAGG AGCAGCAGAGGATAATGAAGACGGCCATGAAAGAAGAAGAGAGAGTAAACAGGGAGGCTGATAAGATTGTCAAATGGGCAAAACAGGCTTCCTCCAGGAT GATGAGTTACCATGGGAATGAAGACCAAGAGGATTTTGATGCCCTTAGTGATGATGATAATCATCATTTGGCTGGAAAATAG
AA sequence Show only first row Show all	>Lus10033293 pacid=23172137 polypeptide=Lus10033293 locus=Lus10033293.g ID=Lus10033293.BGIv1.0 annot-version=v1.0 MADFGFGTLSDTDDSAVDELISQTKDLCVLEQVSKINCSSFNDSLLPSDLDTRFRKLKSLPVSRTRSPAAPAANDYPTKPKSLSKSKSDLHHCLSVPGEK LGSVKTEQDKVIGEEDFPDTPNEKSKREYVSDSSSDSDVVFAEEKVEMTRKKSSSNSILKSKSKLPFVVGSPLGLSNSSRDESPSPPRKPGCFWCSPKKT ARRRKSKENWEFDWGSSYGGDDLLSDLGTFSVKEQQRIMKTAMKEEERVNREADKIVKWAKQASSRMMSYHGNEDQEDFDALSDDDNHHLAGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31460			unknown protein		Lus10033293 [exp]	0	1
AT3G24460			Serinc-domain containing serin...		Lus10017728 [exp]	8.7	0.7887
AT3G55550			Concanavalin A-like lectin pro...		Lus10004709 [exp]	14.3	0.7592
AT4G11950			Protein of unknown function (D...		Lus10006712 [exp]	29.3	0.7730
AT3G52500			Eukaryotic aspartyl protease f...		Lus10013325 [exp]	37.2	0.7565
AT3G04470			Ankyrin repeat family protein ...		Lus10032775 [exp]	52.6	0.7390
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10030479 [exp]	57.7	0.7596
AT3G56130			biotin/lipoyl attachment domai...		Lus10010226 [exp]	64.4	0.7438
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10031656 [exp]	105.7	0.6880
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10018739 [exp]	113.3	0.7165
AT4G12340			copper ion binding (.1)		Lus10024588 [exp]	118.2	0.7328

Compare expression of checked genes

Lus10033293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.