Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61590 545 / 0 Protein kinase superfamily protein (.1) AT2G05940 450 / 2e-157 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT5G01020 431 / 1e-150 Protein kinase superfamily protein (.1) AT5G35580 424 / 6e-147 Protein kinase superfamily protein (.1) AT2G26290 416 / 1e-144 ARSK1 root-specific kinase 1 (.1) AT5G15080 394 / 3e-135 Protein kinase superfamily protein (.1) AT1G72540 389 / 1e-133 Protein kinase superfamily protein (.1) AT3G01300 388 / 1e-132 Protein kinase superfamily protein (.1) AT3G28690 384 / 1e-132 Protein kinase superfamily protein (.1.2.3) AT5G56460 380 / 1e-130 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034757 [exp] 705 / 0 AT1G61590 624 / 0.0 Protein kinase superfamily protein (.1) Lus10034897 [exp] 447 / 2e-155 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10033429 [exp] 442 / 1e-153 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10036762 [exp] 428 / 1e-148 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10011930 [exp] 424 / 6e-147 AT2G05940 530 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10027638 [exp] 424 / 8e-147 AT2G05940 529 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10008110 [exp] 414 / 1e-143 AT2G05940 486 / 2e-170 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10013148 [exp] 414 / 2e-143 AT2G05940 484 / 3e-169 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10038087 [exp] 391 / 2e-134 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G128500 [exp] 592 / 0 AT1G61590 622 / 0.0 Protein kinase superfamily protein (.1) Potri.003G105400 [exp] 591 / 0 AT1G61590 597 / 0.0 Protein kinase superfamily protein (.1) Potri.006G141500 [exp] 460 / 2e-161 AT2G05940 638 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.006G219300 [exp] 443 / 4e-155 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.006G113600 [exp] 433 / 2e-151 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1) Potri.016G143200 [exp] 433 / 3e-151 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.003G066300 [exp] 416 / 4e-144 AT2G05940 540 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G168000 [exp] 413 / 4e-143 AT2G05940 519 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.003G222600 [exp] 394 / 1e-136 AT5G56460 585 / 0.0 Protein kinase superfamily protein (.1) Potri.001G002300 [exp] 391 / 1e-135 AT5G56460 608 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10033294 pacid=23172257 polypeptide=Lus10033294 locus=Lus10033294.g ID=Lus10033294.BGIv1.0 annot-version=v1.0 ATGAGGATAGCGGAGGATCTGGCACAGTCGTTTGGGCCGGACTTATACGATTTCCAGCTGTTGGAGCTGCGGGCTATTACCCAGAACTTTGCGGCCCATT TCTTGCTCGGGGAAGGTGGGTTCGGGAGAGTCCATAAAGGTTATGTTGATGATAACTTGAGGGAAGGGCTCCAGGCCCAGCCTGTTGCGGTTAAGTTGCT CGACATCGAAGGTCTCCAAGGACACCGTGAATGGCTGGCGGAAGTTATATTTCTGGGGCAGCTTCGGCACCCGAATTTGGTGAAGTTGATTGGCTACTGT TGCGAGGAAGAAGACAGACTTCTAGTCTATGAGTTCATGCCCCGTGGTAGCTTGGAGAATCATTTGTTTAAAAGGCTATCGGTGACGTTGCCATGGGGGA CAAGGTTGAAGATCGCGATCGGGGCAGCTAAAGGATTGGCCTTCTTGCACAATGCTGACAAACCTGTCATCTATCGCGATTTCAAAACTTCGAATGTCCT TCTCCAATCCGATTTCACAGCTAAACTGTCAGATTTTGGGTTGGCGACTATGGGACCGGAAGGGTCGAAATCCCACGTCACGACCCGAGTAATGGGCACG TACGGGTACGCAGCACCCGAGTACGTTGCCACGGGACACTTGACAACCAAGAGCGATGTGTATAGTTTTGGGGTCGTTTTGCTCGAGCTTCTTACGGGGA GGCGGGCCATGGAAAGGTCAAGGCCCAAGCACGAGCAGAACCTCATCGATTGGGCTAGACCGTACCTCACCAGCACCAGGAGGCTCCGTTACATTATCGA CCCAAGATTTGCTGGACAGTACTCAGTTAAAGGAGCCAAGCAACTGGCCCATCTTGCAGCCCAATGTATCAGTTTGAACCCAAGGGATAGGCCCAAAATG CATGCCATCGTCGACAGCCTCCAAGCTCTTCTACACTATAATAGTGACATGGCTGTGAGCTGCGGCCAGTGGCCACCGTCGTCGCTCAAGGCGTCTTCTA AGTCCGGTGCTGCTCCGAAAAACAAAGGTAGAAGAGTGGTGGATGGTTCTAGGACTTCGAGTTATCGAAAATCGGCTCCAGCTGTGTCGACCAAGGTGTA A
AA sequence Show only first row Show all	>Lus10033294 pacid=23172257 polypeptide=Lus10033294 locus=Lus10033294.g ID=Lus10033294.BGIv1.0 annot-version=v1.0 MRIAEDLAQSFGPDLYDFQLLELRAITQNFAAHFLLGEGGFGRVHKGYVDDNLREGLQAQPVAVKLLDIEGLQGHREWLAEVIFLGQLRHPNLVKLIGYC CEEEDRLLVYEFMPRGSLENHLFKRLSVTLPWGTRLKIAIGAAKGLAFLHNADKPVIYRDFKTSNVLLQSDFTAKLSDFGLATMGPEGSKSHVTTRVMGT YGYAAPEYVATGHLTTKSDVYSFGVVLLELLTGRRAMERSRPKHEQNLIDWARPYLTSTRRLRYIIDPRFAGQYSVKGAKQLAHLAAQCISLNPRDRPKM HAIVDSLQALLHYNSDMAVSCGQWPPSSLKASSKSGAAPKNKGRRVVDGSRTSSYRKSAPAVSTKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61590			Protein kinase superfamily pro...		Lus10033294 [exp]	0	1
AT1G61590			Protein kinase superfamily pro...		Lus10034757 [exp]	1.0	0.9917
AT5G42655			Disease resistance-responsive ...		Lus10032310 [exp]	1.4	0.9814
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006835 [exp]	3.2	0.9762
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	3.5	0.9779
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10006668 [exp]	3.7	0.9749
AT5G40230			nodulin MtN21 /EamA-like trans...		Lus10033412 [exp]	4.2	0.9654
AT2G02850		ARPN	plantacyanin (.1)		Lus10022800 [exp]	4.5	0.9764
AT2G23450			Protein kinase superfamily pro...		Lus10011652 [exp]	6.0	0.9752
AT1G14160			Uncharacterised protein family...		Lus10036770 [exp]	7.1	0.9675
AT1G14160			Uncharacterised protein family...		Lus10037160 [exp]	7.5	0.9743

Compare expression of checked genes

Lus10033294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.