Plant FIBer expression Database

Lus10033295 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G11760 149 / 5e-47 MED32 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034758
[exp]
260 / 6e-91 AT1G11760 164 / 9e-53 unknown protein
Lus10030983
[exp]
244 / 3e-84 AT1G11760 161 / 3e-51 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G152700
[exp]
164 / 4e-53 AT1G11760 174 / 9e-57 unknown protein
PFAM info
Representative CDS sequence
>Lus10033295 pacid=23172051 polypeptide=Lus10033295 locus=Lus10033295.g ID=Lus10033295.BGIv1.0 annot-version=v1.0
ATGGTTAATGTGATGGATGACATGGCGGATTCACTAAACAATGCCTATCAGGAATTTGTTGCTGCAGCAGCGAATGTGATAGAGACCAAAGAGTTGGACA
GCGCTCAGAAGACAGTCGGTACTGATACTTTGTTGGAGAACTTTAAGCAGAAGTGGGAGTTGTTGAGGGTAGCATGTGATCAGGCCGAGGAGATTGTGGA
GTCTGCGAAACAAAGGATAGAGTCTGAATGCTTGGTTGATGAAGCTACTGGAACTGGAACTGCAACTGCTAATCCGAAGCCCGGACAGACAGCAACACCG
AGTCTTGCTCCGATGAATGCAGTTCGGCTAGAGCAGATGAGTAAGGCTGTAAGGAGGCTGATGATCGAACTCCAACATGGGTCTGGAGCTGCTTCCGGTG
CACAAGGGCATTCACATCCTTTCCCTCTTTTTAATGCCTAG
AA sequence
>Lus10033295 pacid=23172051 polypeptide=Lus10033295 locus=Lus10033295.g ID=Lus10033295.BGIv1.0 annot-version=v1.0
MVNVMDDMADSLNNAYQEFVAAAANVIETKELDSAQKTVGTDTLLENFKQKWELLRVACDQAEEIVESAKQRIESECLVDEATGTGTATANPKPGQTATP
SLAPMNAVRLEQMSKAVRRLMIELQHGSGAASGAQGHSHPFPLFNA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G11760 MED32 unknown protein Lus10033295
[exp]
0 1
AT1G11760 MED32 unknown protein Lus10034758
[exp]
1.4 0.8790
AT5G54750 Transport protein particle (TR... Lus10006060
[exp]
2.0 0.8534
AT5G01600 ATFER1 ARABIDOPSIS THALIANA FERRETIN ... Lus10012233
[exp]
2.4 0.8257
AT3G32930 unknown protein Lus10039189
[exp]
4.5 0.8232
AT2G37975 Yos1-like protein (.1) Lus10017192
[exp]
4.9 0.7826
AT1G16000 unknown protein Lus10023116
[exp]
10.6 0.7583
AT5G37475 Translation initiation factor ... Lus10008317
[exp]
11.7 0.7759
AT2G43780 unknown protein Lus10035718
[exp]
13.5 0.7814
AT5G51510 unknown protein Lus10027200
[exp]
17.2 0.8238
AT2G43780 unknown protein Lus10037305
[exp]
18.0 0.7679

Lus10033295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.