Plant FIBer expression Database

Lus10033296 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G14850 691 / 0 Alg9-like mannosyltransferase family (.1.2)
AT1G02145 59 / 4e-09 EBS4, ALG12 EMS-MUTAGENIZED BRI1\(BRASSINOSTEROID INSENSITIVE 1\) SUPPRESSOR 4, homolog of asparagine-linked glycosylation 12 (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033341
[exp]
940 / 0 AT5G14850 701 / 0.0 Alg9-like mannosyltransferase family (.1.2)
Lus10034759
[exp]
889 / 0 AT5G14850 589 / 0.0 Alg9-like mannosyltransferase family (.1.2)
Lus10043256
[exp]
54 / 2e-07 AT1G02145 669 / 0.0 EMS-MUTAGENIZED BRI1\(BRASSINOSTEROID INSENSITIVE 1\) SUPPRESSOR 4, homolog of asparagine-linked glycosylation 12 (.1.2.3.4)
Lus10019399
[exp]
53 / 4e-07 AT1G02145 712 / 0.0 EMS-MUTAGENIZED BRI1\(BRASSINOSTEROID INSENSITIVE 1\) SUPPRESSOR 4, homolog of asparagine-linked glycosylation 12 (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G098700
[exp]
731 / 0 AT5G14850 720 / 0.0 Alg9-like mannosyltransferase family (.1.2)
Potri.002G139200
[exp]
47 / 3e-05 AT1G02145 706 / 0.0 EMS-MUTAGENIZED BRI1\(BRASSINOSTEROID INSENSITIVE 1\) SUPPRESSOR 4, homolog of asparagine-linked glycosylation 12 (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0111 GT-C PF03901 Glyco_transf_22 Alg9-like mannosyltransferase family
Representative CDS sequence
>Lus10033296 pacid=23172163 polypeptide=Lus10033296 locus=Lus10033296.g ID=Lus10033296.BGIv1.0 annot-version=v1.0
ATGAGGCAGAGACCCGTTGAAGCAAAAGCCTCTGTCGTCGAAACCAATGCTCAGCAGTATGAAGACAGGAGATCCATCAAATCCACTTCAGTTTCTGATA
CTAGAATCTTCGCCTTCTGTTTTGCTTTACGGATAGTTAACTCTCTCCTAATACAGACCTACTTCAACCCGGATGAGTACTGGCAATCTCTGGAAGTTGC
ACACCGTCTTGTTTTTGGGTATGGTCATTTGACGTGGGAATGGAAGAAGGGAATTCGTAGTTATTTGCACCCTTTGGTCTTTGCGGCATTTTATAAAGTT
CTAGCAGTTTTGGGTCTTGATACTCCGTGGTTAATGGTAAAGTCTCCAAGGTTGTTGCAAGCCCTGTTTTCAGCATTTGGTGATTTGTACTGCTATAAAC
TTTCTTTGGTGATCTTTGATGCTTCTACCGCACGATGGGCTCTTTTCTCTCAATTGACCAATTGGTTTATGTTCTTTTGCTTCAACCGCACATTATCAAA
TAGCCTGGAAACAGTTCTTACATTAGTGGGTTTGTATCACTGGCCTTGTATGCGAACCTCTCCTGGTGATGCTTTGTTGGGTTCAAGGAAGGTGGGGTTG
CTGATCGCAGGATTAGCATGTGCAATCCGGCCGACATGTGCTGTTATATGGGTTTATGTTGGCTTACTTGAGCTGCTTCTTACTCGTGACCGAATAAGAT
TTTTCGCTCTGGAGGTGGTCCCCATAGGGGCACTCATACTTGGACTTTCAAGCTTAGTTGATCGAGTTATGTATAGCTACTGGGTATTTGTACCTTGGAG
TTTTCTCAAGTTCAATTTTCTTTCCTCTGGTGGAGATTATTATGGAACTCACCCTTGGCACTGGTACTTTTCTCAAGGATTTTCAGTTATGCTCTTCACT
TTCTTACCATTTTCAATAGCTGGGATCATCAAGTCCAGATATTGGAAGCTTTCCGGCCTAGTTGCATGGGTTTTAACTCTCTATAGTTTATTGGGCCACA
AAGAATTCAGGTTTGTTTTACCTGTGCTTCCAATAGCTTTAATGTTTTCTGGATATTCGTTGGCCTTGATGGCAAACCCTGCTCCCTCAAATGGCAAAAG
GAAAGGTTCTTCGAAGAACAAATCCCTTAAGCAAATTGTATTTCCGGTGTTCTTCTTGCTTGCCACGAACATTCCAATGGCCTTGTACATGAGTTTGGTC
CATCAGAGAGGAACTGAAGATGTGATGATCTATCTATCCAAAGAAGCTCGTGGAGATAAAGTCAGTAGCATTCTCTTCCTAATGCCTTGCCATGCCTCAC
CTTACTACTCTAGTCTGCATTACAATGTGCCAATGCATTTCCTGGACTGCACACCAAGCGAAGGGAGAGAAATCCCAGATGAGTCAGACAGATTCCTGAT
GGATCCTGTTGGTTTTATGGAAGAACTCTCAAAGGAGTGGTCTCCACCGAGTCATATTGTGTTATTCGAGTCAGAGGAAAGACTATTGAAGGAATTTTTG
TTGTCACGTTCCTTTAAAGAGTCGCAGAGGTTTTTCCATGCCCACTTCAAAGTTGATCGTGATCTCCAAGCTTCAGTTGTAGTTTATACTTTGGACCATC
ATTGA
AA sequence
>Lus10033296 pacid=23172163 polypeptide=Lus10033296 locus=Lus10033296.g ID=Lus10033296.BGIv1.0 annot-version=v1.0
MRQRPVEAKASVVETNAQQYEDRRSIKSTSVSDTRIFAFCFALRIVNSLLIQTYFNPDEYWQSLEVAHRLVFGYGHLTWEWKKGIRSYLHPLVFAAFYKV
LAVLGLDTPWLMVKSPRLLQALFSAFGDLYCYKLSLVIFDASTARWALFSQLTNWFMFFCFNRTLSNSLETVLTLVGLYHWPCMRTSPGDALLGSRKVGL
LIAGLACAIRPTCAVIWVYVGLLELLLTRDRIRFFALEVVPIGALILGLSSLVDRVMYSYWVFVPWSFLKFNFLSSGGDYYGTHPWHWYFSQGFSVMLFT
FLPFSIAGIIKSRYWKLSGLVAWVLTLYSLLGHKEFRFVLPVLPIALMFSGYSLALMANPAPSNGKRKGSSKNKSLKQIVFPVFFLLATNIPMALYMSLV
HQRGTEDVMIYLSKEARGDKVSSILFLMPCHASPYYSSLHYNVPMHFLDCTPSEGREIPDESDRFLMDPVGFMEELSKEWSPPSHIVLFESEERLLKEFL
LSRSFKESQRFFHAHFKVDRDLQASVVVYTLDHH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G14850 Alg9-like mannosyltransferase ... Lus10033296
[exp]
0 1
AT3G28030 UVR1, UVH3 UV REPAIR DEFECTIVE 1, ULTRAVI... Lus10039424
[exp]
2.2 0.8645
AT1G04010 ATPSAT1 phospholipid sterol acyl trans... Lus10008234
[exp]
3.0 0.8104
AT3G56120 S-adenosyl-L-methionine-depend... Lus10017739
[exp]
15.8 0.8157
AT5G57250 Pentatricopeptide repeat (PPR)... Lus10036510
[exp]
16.6 0.8180
AT1G28210 ATJ1 DNAJ heat shock family protein... Lus10020949
[exp]
16.7 0.7736
Lus10010342
[exp]
19.1 0.8012
AT5G15550 Transducin/WD40 repeat-like su... Lus10041271
[exp]
20.5 0.7873
Lus10036475
[exp]
23.7 0.7784
AT5G60040 NRPC1 nuclear RNA polymerase C1 (.1.... Lus10013536
[exp]
24.5 0.7474
AT2G29200 APUM1 pumilio 1 (.1) Lus10004976
[exp]
25.8 0.8108

Lus10033296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.