Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19460 595 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT1G73160 440 / 7e-151 UDP-Glycosyltransferase superfamily protein (.1) AT5G59070 360 / 1e-119 UDP-Glycosyltransferase superfamily protein (.1) AT3G45100 58 / 1e-08 SETH2 UDP-Glycosyltransferase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034760 [exp] 871 / 0 AT4G19460 636 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10014499 [exp] 479 / 4e-166 AT1G73160 616 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10032187 [exp] 476 / 9e-165 AT1G73160 615 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016475 [exp] 399 / 1e-134 AT5G59070 602 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10040757 [exp] 395 / 2e-130 AT5G59070 597 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10024892 [exp] 66 / 5e-11 AT3G45100 731 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10022925 [exp] 59 / 4e-09 AT3G45100 536 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G105500 [exp] 658 / 0 AT4G19460 664 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G128300 [exp] 649 / 0 AT4G19460 645 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G097000 [exp] 462 / 1e-159 AT1G73160 657 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G038400 [exp] 393 / 2e-132 AT5G59070 609 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G130000 [exp] 59 / 6e-09 AT3G45100 749 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10033297 pacid=23172098 polypeptide=Lus10033297 locus=Lus10033297.g ID=Lus10033297.BGIv1.0 annot-version=v1.0 ATGAACAACAAGCACCGTTGCATCTTTTCAACCTGCAGCAATAGTAGCAGAAACAGATTCATGGCATTCAACACCCACTTAACCAACAACAACAAACCCA AGAAACTCCTCCTCCTACCTAATTCCTCCTCCTCCCTTTCAAATCTCTGCACCATCTTCTTCTTCATAGTCATTTTCACCATCCCATCTCTCTTTGTCCT CCGCCGCTCCCCTGCCCCCTCCTCCTCCTCTGCCAACCAGCCATGGTCAGGCGACCTGCGTGCAGCTGACTTCTCATGGAACCGTCTGAGTTTCGTGTCC CAAGACTCTAATATCAAGCTCAAGATTGCTGTTTTCTCACGTAAATGGCCTATTGGCACGGTCCCTGGAGGCATGGAGCGTCACGCTTTCACCCTCCACT CTGCTTTAGCTCGCAGAGGCCACAAAGTTCATGTCTTTACCTCTCCCGTCCACGACCAAGCCTTCCCTTCTTCCACCACCTCTTCTCACGGCGTGGTGAT CCACTCCTACAAAGGCGAATCGTCCCGGAGGTTCAAGTACAGAGAGGCGTGGGAGCTCTTTGAGAAGGAGAACAACCGATCATCCTTCGACGTCATCCAC TCGGAGAGCGTGGCGATACCCTACTGGAAGGCTCGCAACTTCCCCAACCTCGTCGTCACCTGGCACGGCATCGCCTATGAGACCTTGCAATCCAAAATCT ACCAGGATTTGGCTCGGAAGCCGAAGGAGGCCATACTACCAGAATTCAACGCGAGCATGTACGGACTCGTCCCCAAACTGATCAACGAGATTCGATTCTT CCACAACTACGCTCAACACATCGCCATCAGCAGCAGCTGCGGCGAAATTCTGAGAGATGTGTACCAAATTCCCGGAAGGAGAGTCCACGTCATCGTCAAC GGAGTCGACGAGAACGAGTTCGGAGAGGATAAGAGATTGGGGAACGAATTCCGGTCCAAAATCGGAGTTCCTGCGAATGCAACTTTAGTGCTCGGCGTGG CAGGAAGATTGGTGAAAGATAAAGGACATCCGATACTCTACGAAGCGATATCCAAGTTCATAACAAATCACCCGAATGTGTACCTTGTCGTGGCAGGGTC TGGTCCATGGGAGCGTAGATACAGAGAGCTCGGACCTCAGGTTATGGTTGTGGGGTCCATGGCTCCGTCGGAACTGAAGGCGTTCTACAATTCGATCGAC GTGTTTGTCAATCCGACGCTTAGGCCGCAGGGTTTGGATCTTACTTTGATGGAGGCGATGATGAGCGGGACTCCGGTTATGACGTCGAGATTCGCGAGTA TAAAGGGGACGATTATAGTTGATGATGAGTTCGGATTCATGTTCTCGCCGAATGTCGACTCGTTGATGGAGGCATTGGAGATGGCTGTCGACGAAGGTGC AGAGAGGCTGGCGCAGAGAGGGGAGGCTTGTAGAGTGTATGCTGCTTCCATGTTCACTGCAACGAACATGGCTTTGGCTCATGAGAGGTTGTTTCTCTGT ATCAAGAACCAGACATTTTGTGCATACCCTTGA
AA sequence Show only first row Show all	>Lus10033297 pacid=23172098 polypeptide=Lus10033297 locus=Lus10033297.g ID=Lus10033297.BGIv1.0 annot-version=v1.0 MNNKHRCIFSTCSNSSRNRFMAFNTHLTNNNKPKKLLLLPNSSSSLSNLCTIFFFIVIFTIPSLFVLRRSPAPSSSSANQPWSGDLRAADFSWNRLSFVS QDSNIKLKIAVFSRKWPIGTVPGGMERHAFTLHSALARRGHKVHVFTSPVHDQAFPSSTTSSHGVVIHSYKGESSRRFKYREAWELFEKENNRSSFDVIH SESVAIPYWKARNFPNLVVTWHGIAYETLQSKIYQDLARKPKEAILPEFNASMYGLVPKLINEIRFFHNYAQHIAISSSCGEILRDVYQIPGRRVHVIVN GVDENEFGEDKRLGNEFRSKIGVPANATLVLGVAGRLVKDKGHPILYEAISKFITNHPNVYLVVAGSGPWERRYRELGPQVMVVGSMAPSELKAFYNSID VFVNPTLRPQGLDLTLMEAMMSGTPVMTSRFASIKGTIIVDDEFGFMFSPNVDSLMEALEMAVDEGAERLAQRGEACRVYAASMFTATNMALAHERLFLC IKNQTFCAYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19460			UDP-Glycosyltransferase superf...		Lus10033297 [exp]	0	1
					Lus10040690 [exp]	1.7	0.9010
AT2G40330		RCAR9, PYL6	regulatory components of ABA r...		Lus10007275 [exp]	2.8	0.8988
AT2G40330		RCAR9, PYL6	regulatory components of ABA r...		Lus10029222 [exp]	3.5	0.8910
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10038282 [exp]	6.6	0.8623
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10017431 [exp]	6.7	0.8616
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Lus10030484 [exp]	7.9	0.8489
AT5G25820			Exostosin family protein (.1)		Lus10023927 [exp]	8.5	0.8367
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10041159 [exp]	9.8	0.8537
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014402 [exp]	10.4	0.8458
AT2G38870			Serine protease inhibitor, pot...		Lus10014740 [exp]	11.0	0.8486

Compare expression of checked genes

Lus10033297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.