Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45280 544 / 0 Pectinacetylesterase family protein (.1.2) AT4G19410 543 / 0 Pectinacetylesterase family protein (.1.2) AT4G19420 497 / 1e-176 Pectinacetylesterase family protein (.1.2) AT1G57590 423 / 1e-146 Pectinacetylesterase family protein (.1) AT2G46930 422 / 1e-146 Pectinacetylesterase family protein (.1) AT3G62060 415 / 6e-144 Pectinacetylesterase family protein (.1) AT5G26670 405 / 7e-140 Pectinacetylesterase family protein (.1.2) AT3G05910 404 / 2e-139 Pectinacetylesterase family protein (.1.2) AT5G23870 379 / 1e-129 Pectinacetylesterase family protein (.1.2.3) AT3G09410 379 / 1e-129 Pectinacetylesterase family protein (.1.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034762 [exp] 629 / 0 AT4G19410 440 / 1e-154 Pectinacetylesterase family protein (.1.2) Lus10034767 [exp] 496 / 5e-176 AT4G19420 574 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033305 [exp] 494 / 3e-175 AT4G19420 572 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10035682 [exp] 469 / 3e-165 AT4G19420 556 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10037269 [exp] 456 / 4e-158 AT4G19420 548 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10034766 [exp] 429 / 9e-150 AT4G19420 508 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10038024 [exp] 408 / 4e-141 AT3G62060 610 / 0.0 Pectinacetylesterase family protein (.1) Lus10009966 [exp] 407 / 9e-141 AT3G62060 613 / 0.0 Pectinacetylesterase family protein (.1) Lus10007200 [exp] 396 / 3e-136 AT3G62060 585 / 0.0 Pectinacetylesterase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G233900 [exp] 620 / 0 AT5G45280 567 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.003G046200 [exp] 600 / 0 AT5G45280 541 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.004G234100 [exp] 492 / 6e-174 AT4G19420 597 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.005G001500 [exp] 423 / 5e-147 AT3G05910 602 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.014G110900 [exp] 419 / 1e-144 AT3G62060 611 / 0.0 Pectinacetylesterase family protein (.1) Potri.013G000900 [exp] 415 / 1e-143 AT3G05910 629 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.010G004400 [exp] 406 / 2e-140 AT5G26670 559 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.006G084900 [exp] 399 / 1e-137 AT3G09410 570 / 0.0 Pectinacetylesterase family protein (.1.3) Potri.012G142300 [exp] 378 / 1e-129 AT5G23870 511 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.015G145400 [exp] 366 / 4e-125 AT5G23870 509 / 0.0 Pectinacetylesterase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03283 [flax] [poplar] PAE Pectinacetylesterase
Representative CDS sequence Show only first row Show all	>Lus10033301 pacid=23172038 polypeptide=Lus10033301 locus=Lus10033301.g ID=Lus10033301.BGIv1.0 annot-version=v1.0 ATGGGACGTTGGAGTTACTTGCCTCTTCTTCTGTGTGCTTGTCTTGTAGCTGCCGCTAATGCTGCTGGAGACATCCCCATCACCATTCTCCAAACTGCTA AAGCCAGAGGAGCTGTGTGCTTAGATGGAAGTCCACCAGCATACCATTTGGAGAAAGGCTCCGGTTCAGGAATCAACAACTGGGTTGTCCATATTGAGGG AGGAGGATGGTGCGCCGACACAAAGAGCTGCGTGTCGAGGAGGGACACGTACAAAGGATCTTCCTCGAAGATGGAGAAGACAATGGGTTTCTCTGGGATT CTCGGTAGCAAAGTTGCTTCCAATCCTGACTTTTACAACTGGAACAGAATCAAGATAAAGTACTGCGACGGCTCTTCCTTCACTGGTGACGTGGAGGCTG TTGATCCGAAAACGAACCTTTACTTCAGGGGAGAGAGGATCTGGCAAGCAGTTATGGATGATCTGCTGGCCAAAGGGATGAAGAATGCCCAGAATGCTAT ACTATCGGGTTGCTCAGCGGGTGGATTGGCTGCGATATTGCACTGTGACAAGTTCAGGGGACTGCTGCCGGCTTCTGCTCGTGTCAAATGTGTCTCTGAT GCTGGCTTCTTCATTCATGGGAAGGATATAACAGGAGGGGTTGCAATTGAGAAATTCTTTGGCGGCGTTGTCAGAACACACGGATCCACCAAGAATTTGC CCGCGTCATGCACTTCAAGAATGAAGCCCGAACTGTGTTTCTTCCCACAGTATGTTGCTCAGACCCTGAAGACTCCTCTTTTCCTCATCAACTCTGCATA CGATTCCTGGCAGATAAAGAATGTACTTGCACCCACCTCTACTGATAAGATGGGAGAATGGAAAAGCTGCAAGCTTGACTTGAAGAAATGCTCTGCTTCC CAACTCCAGACTCTACAAGGTTTCAGGACGCAGTTCTTGAGCGCAGTGAACACAGGTCTAGGTAACGCAACAACTAGTTCAAGGGGTTTGTTTATTAACT CATGCTACGCACATTGCCAATCAGGGTCGGCCCTAACTTGGGCTGGCAAAGGTCCGATCTTGGCCAACACAAGAATTGGGAAGGCAGTTGGAGACTGGTT CTGGGATAGGAACCGTTTCGAGAAAATAGATTGCCCGTACCCTTGCAACCCAACCTGCGTCAGTGTTGATTCCGATTCTTAA
AA sequence Show only first row Show all	>Lus10033301 pacid=23172038 polypeptide=Lus10033301 locus=Lus10033301.g ID=Lus10033301.BGIv1.0 annot-version=v1.0 MGRWSYLPLLLCACLVAAANAAGDIPITILQTAKARGAVCLDGSPPAYHLEKGSGSGINNWVVHIEGGGWCADTKSCVSRRDTYKGSSSKMEKTMGFSGI LGSKVASNPDFYNWNRIKIKYCDGSSFTGDVEAVDPKTNLYFRGERIWQAVMDDLLAKGMKNAQNAILSGCSAGGLAAILHCDKFRGLLPASARVKCVSD AGFFIHGKDITGGVAIEKFFGGVVRTHGSTKNLPASCTSRMKPELCFFPQYVAQTLKTPLFLINSAYDSWQIKNVLAPTSTDKMGEWKSCKLDLKKCSAS QLQTLQGFRTQFLSAVNTGLGNATTSSRGLFINSCYAHCQSGSALTWAGKGPILANTRIGKAVGDWFWDRNRFEKIDCPYPCNPTCVSVDSDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45280			Pectinacetylesterase family pr...		Lus10033301 [exp]	0	1
AT2G17290		ATCPK6, ATCDPK3...	calcium dependent protein kina...		Lus10013842 [exp]	9.4	0.8405
AT1G03610			Protein of unknown function (D...		Lus10039803 [exp]	14.1	0.7763
AT1G15110		PSS1	phosphatidylserine synthase 1,...		Lus10034618 [exp]	17.8	0.7898
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10014925 [exp]	20.1	0.7983
AT1G14560			Mitochondrial substrate carrie...		Lus10013527 [exp]	27.5	0.7110
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028715 [exp]	27.7	0.7938
AT4G07390			Mannose-P-dolichol utilization...		Lus10021350 [exp]	34.0	0.7728
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10041179 [exp]	36.5	0.7429
AT1G02810			Plant invertase/pectin methyle...		Lus10013416 [exp]	46.1	0.7155
AT4G03420			Protein of unknown function (D...		Lus10033707 [exp]	72.2	0.7030

Compare expression of checked genes

Lus10033301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.