Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48460 444 / 3e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28580 221 / 4e-68 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G27360 218 / 8e-67 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28600 214 / 2e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28590 209 / 2e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28650 208 / 4e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45910 208 / 4e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28640 208 / 5e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28570 205 / 5e-62 SGNH hydrolase-type esterase superfamily protein (.1.2) AT1G31550 205 / 1e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034763 [exp] 692 / 0 AT3G48460 474 / 1e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10000523 [exp] 191 / 1e-56 AT1G28590 363 / 6e-124 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013938 [exp] 183 / 2e-53 AT1G28590 367 / 2e-125 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015477 [exp] 172 / 3e-48 AT1G28600 239 / 5e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10029638 [exp] 167 / 2e-47 AT1G54790 443 / 2e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10029639 [exp] 160 / 6e-45 AT1G54790 421 / 4e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10020657 [exp] 164 / 4e-44 AT1G77170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024085 [exp] 156 / 3e-43 AT1G31550 321 / 3e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10015476 [exp] 157 / 2e-42 AT1G28600 315 / 5e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G089700 [exp] 476 / 8e-168 AT3G48460 478 / 2e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.012G093400 [exp] 254 / 9e-83 AT3G48460 243 / 3e-79 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G054400 [exp] 218 / 3e-67 AT5G45910 377 / 8e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G054300 [exp] 207 / 1e-62 AT1G28590 388 / 1e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G024300 [exp] 182 / 3e-53 AT5G03980 275 / 1e-90 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024966 [exp] 174 / 2e-50 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G025000 [exp] 174 / 2e-50 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024933 [exp] 174 / 3e-50 AT5G03980 255 / 1e-82 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024900 [exp] 173 / 5e-50 AT5G03980 273 / 1e-89 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G006500 [exp] 168 / 6e-48 AT1G09390 506 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10033302 pacid=23172215 polypeptide=Lus10033302 locus=Lus10033302.g ID=Lus10033302.BGIv1.0 annot-version=v1.0 ATGACAACATTCTCACTTCCGCCACTTGCCGCCGCCACCATCATCACTCTGCTCTTTACAACCGCCGCCGCTGTGACTGCGGCCAATAATAACCCTCAGT CGTTCAAGAAGATCTACGCCTTCGGGGACTCATTCACCGACACAGGCAACACAAGGTCGGCAGGGCCCGGCGGAGGATTCGGCCACGTGTCCAACCCACC GTACGGGGTCACCTTCTTCCACCGCCCGACCAACCGATACTCTGACGGCCGGCTCGTGATCGACTTCGTCACCCAATCCCTCAACCTCCCTTTCCTCCCT CCATACAAGAGTCTAACCAACGGGAGCAGCGGCGATTCCGGCGTGAATTTCGCGGTCGGGGGCGCCACGGCGATAAACCACAGGTTCTTCGTGAGGAACA ACCTGTCGCTGGATGCTACGCCGCAGTCGATTCAGACGCAGATGATTTGGTTCGACTGGTTTCTGGAGAAGCGGGTTGGATGTAATCGGAGTGCCACAGT GGAGACGGAGGCCAAGTGTAAGGCAGCGATGGAGGATGCTCTGTTTTGGGTCGGGGAGATTGGGGTTAACGACTACGCTTACATTCTTGGATCAGAAGTT TCCGGCGATACGATTCGGAAGCTCGGCATCAGTAGCGTTACCGGAGTCATTGAGGTCAGGCCCCTTATTATCGATCATTTTATTACATATTCAGCTCAGA AATTTAATCACGATGTTGACATCTTAAAAGAAAGAAACGGAACATCTTGCAGTCTTCTCATTAAATCAAAATTTGAGCAGGCACTACTAAAGAGAGGAGC CAAATACATGGTAGTACAAGGCCTACCACCATCGGGTTGCCTAACTCTAGCACTGACCCTAGCACCCGAGGACGATAGAGACGAGCTCGGTTGCGTGAGG AGTGCCAACAACCAAACCAGCATCCACAACTCGGTCTACCAAGCCAAGCTCCAAGAACTCCGGACCCGTTACCCGGACGCATCGATAGTGTACTTGGACT ACTGGAACGCCTACCGTCAGATCGTTAAGAACCCCGGTAAGTACGGGATGAAGGAGCCCTTCAAGGCCTGCTGCGGGTCGGGAGACGCCCCTTACAACTT CAACGTGTTCGCCACGTGCGGCACTCCCGGTGCTGAGAAGCCCTGCCCCGATCCGGCGAGTTACATTAACTGGGACGGCGTGCATCTCACGGAAGGGATG TATAGAGTGCTTGCTGACATGTTTGTTAACGGGAGTTTTAGTACTCCGCCGTTTGCGACGTTGGTTGGTCGACAGATGGGGTAG
AA sequence Show only first row Show all	>Lus10033302 pacid=23172215 polypeptide=Lus10033302 locus=Lus10033302.g ID=Lus10033302.BGIv1.0 annot-version=v1.0 MTTFSLPPLAAATIITLLFTTAAAVTAANNNPQSFKKIYAFGDSFTDTGNTRSAGPGGGFGHVSNPPYGVTFFHRPTNRYSDGRLVIDFVTQSLNLPFLP PYKSLTNGSSGDSGVNFAVGGATAINHRFFVRNNLSLDATPQSIQTQMIWFDWFLEKRVGCNRSATVETEAKCKAAMEDALFWVGEIGVNDYAYILGSEV SGDTIRKLGISSVTGVIEVRPLIIDHFITYSAQKFNHDVDILKERNGTSCSLLIKSKFEQALLKRGAKYMVVQGLPPSGCLTLALTLAPEDDRDELGCVR SANNQTSIHNSVYQAKLQELRTRYPDASIVYLDYWNAYRQIVKNPGKYGMKEPFKACCGSGDAPYNFNVFATCGTPGAEKPCPDPASYINWDGVHLTEGM YRVLADMFVNGSFSTPPFATLVGRQMG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10033302 [exp]	0	1
AT3G52500			Eukaryotic aspartyl protease f...		Lus10016967 [exp]	1.7	0.8973
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10015393 [exp]	3.5	0.8649
AT3G62110			Pectin lyase-like superfamily ...		Lus10009972 [exp]	4.0	0.8827
AT5G19210			P-loop containing nucleoside t...		Lus10034052 [exp]	7.1	0.8055
AT1G78530			Protein kinase superfamily pro...		Lus10005569 [exp]	8.9	0.8215
AT3G62110			Pectin lyase-like superfamily ...		Lus10038030 [exp]	9.4	0.8575
AT3G52500			Eukaryotic aspartyl protease f...		Lus10021293 [exp]	11.6	0.8204
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10013968 [exp]	13.2	0.8490
AT5G02010		ATROPGEF7, ROPG...	RHO guanyl-nucleotide exchange...		Lus10021500 [exp]	15.9	0.8076
AT3G14470			NB-ARC domain-containing disea...		Lus10003571 [exp]	18.3	0.8455

Compare expression of checked genes

Lus10033302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.