Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51510 147 / 4e-45 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034765 [exp] 277 / 2e-96 AT3G51510 154 / 5e-48 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G455900 [exp] 142 / 2e-43 AT3G51510 176 / 2e-56 unknown protein Potri.011G146200 [exp] 141 / 2e-43 AT3G51510 158 / 3e-50 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033303 pacid=23172141 polypeptide=Lus10033303 locus=Lus10033303.g ID=Lus10033303.BGIv1.0 annot-version=v1.0 ATGGCTACACCCACCTGCAGCTTTCCCTCACCGCCAATCCCCCACCTGAGGAAATCAGTGACGAGTCTCGTTGTTACAACCAGCAGCATTTCTCAACACG AGTATTGTAGTTCCAACTTCCGGATTCACAACAAGAAACCAACAACAAGATTTTTGGTCCGCTCAAGTTCAGGCAAGAAACCCGACGAACCACCAATTCC GTCATGGGCCGATCCGAATTCCGACGAACAGCCGCCTTGGGCACGGGGAGAATCCAGCAAACAAACTGACGGCGGGGAATTCCAGATCCCTTTCTACGCT TACCTCCTTGCTTCAGCCATTACTGCAATTGCCGCCATTGGGTCGGTGTTTGAGTATGTAAACCAGAAGCCGATCTTCGGGGTTCTCTCCGTCGACAGCA TTTTCTATGCTCCCATACTTGGATTCTTTGCTTTCACTGGCATCCCTACCTCTGCATTTCTGTGGTACAAATCTGTGGAAGCAGCAAACAAAGATGCAGA GGAACAAGATAGAAGAGATGGCTATATCAAATGA
AA sequence Show only first row Show all	>Lus10033303 pacid=23172141 polypeptide=Lus10033303 locus=Lus10033303.g ID=Lus10033303.BGIv1.0 annot-version=v1.0 MATPTCSFPSPPIPHLRKSVTSLVVTTSSISQHEYCSSNFRIHNKKPTTRFLVRSSSGKKPDEPPIPSWADPNSDEQPPWARGESSKQTDGGEFQIPFYA YLLASAITAIAAIGSVFEYVNQKPIFGVLSVDSIFYAPILGFFAFTGIPTSAFLWYKSVEAANKDAEEQDRRDGYIK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51510			unknown protein		Lus10033303 [exp]	0	1
AT3G51510			unknown protein		Lus10034765 [exp]	1.0	0.9633
AT5G11480			P-loop containing nucleoside t...		Lus10011673 [exp]	2.0	0.9417
AT3G15110			unknown protein		Lus10009195 [exp]	2.2	0.9380
					Lus10040882 [exp]	2.4	0.9487
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10040147 [exp]	2.8	0.9525
AT3G15900			unknown protein		Lus10011486 [exp]	4.9	0.9226
AT5G52960			unknown protein		Lus10039319 [exp]	6.5	0.9170
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Lus10011484 [exp]	10.2	0.8932
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Lus10023122 [exp]	10.6	0.8980
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10032607 [exp]	11.0	0.9183

Compare expression of checked genes

Lus10033303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.