Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19420 393 / 5e-135 Pectinacetylesterase family protein (.1.2) AT4G19410 352 / 4e-119 Pectinacetylesterase family protein (.1.2) AT5G45280 332 / 6e-111 Pectinacetylesterase family protein (.1.2) AT2G46930 321 / 2e-106 Pectinacetylesterase family protein (.1) AT3G62060 320 / 6e-106 Pectinacetylesterase family protein (.1) AT1G57590 304 / 2e-99 Pectinacetylesterase family protein (.1) AT3G05910 299 / 5e-98 Pectinacetylesterase family protein (.1.2) AT5G26670 299 / 1e-97 Pectinacetylesterase family protein (.1.2) AT1G09550 256 / 2e-81 Pectinacetylesterase family protein (.1) AT3G09410 256 / 4e-81 Pectinacetylesterase family protein (.1.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034767 [exp] 567 / 0 AT4G19420 574 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033305 [exp] 560 / 0 AT4G19420 572 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10034766 [exp] 530 / 0 AT4G19420 508 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10035682 [exp] 498 / 1e-175 AT4G19420 556 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10037269 [exp] 484 / 8e-169 AT4G19420 548 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033301 [exp] 360 / 4e-122 AT5G45280 546 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10007200 [exp] 312 / 1e-102 AT3G62060 585 / 0.0 Pectinacetylesterase family protein (.1) Lus10038024 [exp] 307 / 4e-101 AT3G62060 610 / 0.0 Pectinacetylesterase family protein (.1) Lus10009966 [exp] 308 / 5e-101 AT3G62060 613 / 0.0 Pectinacetylesterase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G233900 [exp] 376 / 3e-128 AT5G45280 567 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.004G234100 [exp] 353 / 8e-119 AT4G19420 597 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.003G046200 [exp] 352 / 8e-119 AT5G45280 541 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.010G004400 [exp] 323 / 7e-107 AT5G26670 559 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.005G001500 [exp] 322 / 8e-107 AT3G05910 602 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.013G000900 [exp] 322 / 1e-106 AT3G05910 629 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.014G110900 [exp] 322 / 5e-106 AT3G62060 611 / 0.0 Pectinacetylesterase family protein (.1) Potri.006G084900 [exp] 295 / 7e-96 AT3G09410 570 / 0.0 Pectinacetylesterase family protein (.1.3) Potri.015G145400 [exp] 277 / 1e-89 AT5G23870 509 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.012G142300 [exp] 275 / 1e-88 AT5G23870 511 / 0.0 Pectinacetylesterase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03283 [flax] [poplar] PAE Pectinacetylesterase
Representative CDS sequence Show only first row Show all	>Lus10033304 pacid=23172062 polypeptide=Lus10033304 locus=Lus10033304.g ID=Lus10033304.BGIv1.0 annot-version=v1.0 ATGGCTGAAGAGTCCAGATTGCTGCAATTAGGCAAATGCTGGCATCTCTTCGCTTCTCTTGCTTTGGTGTGTATGAGCAGAACGGAGGGCCTTTATGTCC CAATTACATATGTGACGAGTGGCGTCTCTAAAGGAGCTGTGTGCTTGGATGGAAGCCCACCAGCTTACAATTTTGATAAAGGATATGGCACAGGGATCAA TAGTTGGTTAATCCAACTTGAGGGAGGAGGATGGTGTCACAATTTCACATCGTGTCTCACTCGTAAGAGTACGAGTTTAGGTTCGTCGATGAAAATGGGG GACCAACTTGCTTTCTCGGGAATTATGAGCAATAGACGTGGTTTCAGTCCAGATTTCTATAATTGGAACAGAGTTAAGGTTAGATACTGCGACGGGTCTT CTTTCACTGGTGATGTGCAAGCTGTAGATCCTGCTACTAATCTTCACTTCAGAGGAGCAAGAGTGTGGTTTGCTGTAATGGAGGATCTTCTTGCCAAAGG GATGAAAAATGCTGAAAATGCTCTTCTCTCTGGATGCTCAGCTGGTGGATTGGCCTCTATTTTGCATTGTGACAGCTTCAAAGCTCTTCTACCGTTAGGA GCTAAAGGTTCTGCAAAGAATTTGCCTCTGTCGTGTAAGGGGAGAATGAATAATCCATCACTGTGCTTCTTCCCACAGAACGTAATCCAGGAAGTTCGAA CACCAGTTTTCCTTCTGAATGCCGCCTACGATTCATGGCAGTATCGGATTCTGGAATCGTTTTCAGATAAAGAACATCCTGGCGCCAAGCGATGCCGATC CACATGGCTCCTGGAATACCTGCAAGATGGATATAAACAACTGCTCACCTCCTCAGATCAAAACGATGCAAGGTGTGACAGAAAAGGATGCATTCAAACT ATTGCCGTCTTTCTCTATTCATCTTCCTGGGCATACGCTATACTCGAACAATTATCATGTTTCGTTGCCTTTAACATCTGCTCTGGGTTTTGCCCATTTC TTTCTACAGCATTCAGGATGCAGTTCTTGAAAACACTGCCCAAGTCATCAAATTTTACAGCCAGAGGATTGTACGTCAACTCCTGCTACGCCCATTGCCA AACAGAGTTTCAAGAAAGCTGGTACATGGCCGACTCTCCAGTTCTTGGTCAGACGAAAATAGCAAAGGCAGTGGGAGATTGGTTTTATGACAGGAAGTCA TTCCAAGAGATTGATTGTCCTTACCCTTGCAATCCAACTTGCCGCGGTTCCGGTGGCGGCGGTGGTGGTGGAGGAACTGTTTCATCAGATCAACCAAATT TATAG
AA sequence Show only first row Show all	>Lus10033304 pacid=23172062 polypeptide=Lus10033304 locus=Lus10033304.g ID=Lus10033304.BGIv1.0 annot-version=v1.0 MAEESRLLQLGKCWHLFASLALVCMSRTEGLYVPITYVTSGVSKGAVCLDGSPPAYNFDKGYGTGINSWLIQLEGGGWCHNFTSCLTRKSTSLGSSMKMG DQLAFSGIMSNRRGFSPDFYNWNRVKVRYCDGSSFTGDVQAVDPATNLHFRGARVWFAVMEDLLAKGMKNAENALLSGCSAGGLASILHCDSFKALLPLG AKGSAKNLPLSCKGRMNNPSLCFFPQNVIQEVRTPVFLLNAAYDSWQYRILESFSDKEHPGAKRCRSTWLLEYLQDGYKQLLTSSDQNDARCDRKGCIQT IAVFLYSSSWAYAILEQLSCFVAFNICSGFCPFLSTAFRMQFLKTLPKSSNFTARGLYVNSCYAHCQTEFQESWYMADSPVLGQTKIAKAVGDWFYDRKS FQEIDCPYPCNPTCRGSGGGGGGGGTVSSDQPNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19420			Pectinacetylesterase family pr...		Lus10033304 [exp]	0	1
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10006672 [exp]	4.5	0.9278
AT4G23940			FtsH extracellular protease fa...		Lus10023066 [exp]	8.6	0.9182
AT5G43960			Nuclear transport factor 2 (NT...		Lus10023722 [exp]	8.7	0.9159
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Lus10015561 [exp]	8.9	0.8828
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009031 [exp]	11.7	0.9148
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10040908 [exp]	13.1	0.8835
AT4G16490			ARM repeat superfamily protein...		Lus10014691 [exp]	13.5	0.8975
AT1G78060			Glycosyl hydrolase family prot...		Lus10007775 [exp]	14.4	0.8845
AT3G61690			nucleotidyltransferases (.1)		Lus10030265 [exp]	16.4	0.9061
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10016579 [exp]	16.5	0.8897

Compare expression of checked genes

Lus10033304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.