Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19420 572 / 0 Pectinacetylesterase family protein (.1.2) AT4G19410 491 / 5e-174 Pectinacetylesterase family protein (.1.2) AT5G45280 476 / 4e-168 Pectinacetylesterase family protein (.1.2) AT3G62060 439 / 5e-153 Pectinacetylesterase family protein (.1) AT2G46930 429 / 3e-149 Pectinacetylesterase family protein (.1) AT5G26670 429 / 6e-149 Pectinacetylesterase family protein (.1.2) AT3G05910 422 / 2e-146 Pectinacetylesterase family protein (.1.2) AT1G57590 416 / 1e-143 Pectinacetylesterase family protein (.1) AT5G23870 376 / 2e-128 Pectinacetylesterase family protein (.1.2.3) AT3G09410 372 / 1e-126 Pectinacetylesterase family protein (.1.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034767 [exp] 792 / 0 AT4G19420 574 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10035682 [exp] 634 / 0 AT4G19420 556 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10034766 [exp] 630 / 0 AT4G19420 508 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10037269 [exp] 623 / 0 AT4G19420 548 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033304 [exp] 548 / 0 AT4G19420 392 / 2e-134 Pectinacetylesterase family protein (.1.2) Lus10033301 [exp] 494 / 6e-175 AT5G45280 546 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10038024 [exp] 427 / 1e-148 AT3G62060 610 / 0.0 Pectinacetylesterase family protein (.1) Lus10009966 [exp] 428 / 2e-148 AT3G62060 613 / 0.0 Pectinacetylesterase family protein (.1) Lus10007200 [exp] 418 / 1e-144 AT3G62060 585 / 0.0 Pectinacetylesterase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G234100 [exp] 613 / 0 AT4G19420 597 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.004G233900 [exp] 501 / 1e-177 AT5G45280 567 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.003G046200 [exp] 483 / 2e-170 AT5G45280 541 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.005G001500 [exp] 441 / 6e-154 AT3G05910 602 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.013G000900 [exp] 440 / 2e-153 AT3G05910 629 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.014G110900 [exp] 441 / 6e-153 AT3G62060 611 / 0.0 Pectinacetylesterase family protein (.1) Potri.010G004400 [exp] 429 / 1e-148 AT5G26670 559 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.006G084900 [exp] 408 / 1e-140 AT3G09410 570 / 0.0 Pectinacetylesterase family protein (.1.3) Potri.012G142300 [exp] 374 / 1e-127 AT5G23870 511 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.015G145400 [exp] 373 / 2e-127 AT5G23870 509 / 0.0 Pectinacetylesterase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03283 [flax] [poplar] PAE Pectinacetylesterase
Representative CDS sequence Show only first row Show all	>Lus10033305 pacid=23172190 polypeptide=Lus10033305 locus=Lus10033305.g ID=Lus10033305.BGIv1.0 annot-version=v1.0 ATGGCAGAGTCCAGGTTACTGCTATCAGCCAAATTTTTGCATCTCATTGTATGCCTTGTTTTGATCTGTTTGACGAGAACCGAGAGCCTTTATGCTCCAA TTACATACGTGACGAGTGGTGTCTCAAAAGGAGCTGTGTGCTTGGATGGAAGCCCACCAGCTTACAACTTTGACAAAGGATATGGAACTGGGATCAATAG TTGGTTGGTGCAACTTGAGGGAGGAGGATGGTGTCACAACGTCACATCGTGTCTTGGTCGTAAGAATACACGCTTAGGTTCGTCGAAGAAGATGGGGGAC CAACTTGCTTTCTCAGGAATTATGAGCAACAGACGTGTGTTCAATCCAGATTACTACAACTGGAACCGAGTGAAGGTTAGATACTGCGATGGATCTTCTT TCACTGGTGATGTGCAAGCAGTAGATCCTGCTACTAACCTTCACTTCAGAGGAGCAAGGGTATGGCTTGCTGTAATGGAGGATCTTCTTGCCAAAGGGAT GAAAAATGCTGAAAATGCTCTTCTCTCTGGATGCTCAGCTGGTGGATTGGCCTCTATTTTGCACTGTGACAGCTTCAGAGCTCTTCTACCAATGGGTGCT AAAGTAAAATGCCTCTCAGATGCTGGTTATTTTGTCAATGTGAAGGATATTTCCGGAGCTTCCTACATTCAAACTTATTTCAACCAAGTGGTCACATTAC ATGGTTCCGCGAAGAATTTGCCTCTCTCATGTAGGAGAAGATTGAAACCATCATCACTGTGTTTCTTCCCACAGAATGTAATCCAGGAAGTTCGAACGCC GGTTTTCCTTCTGAATTCTGCATACGATTCATGGCAGATAAAGAACATCCTGGCGCCAAGTGATGCCGATCCTCGTGGCTCGTGGAATACCTGCAAGATG GACCTAAACCACTGTGCACCTCCTCAGATCCAAACAATGCAAGCATTCAGGAAGCAGTTCTTGAAAACACTGTCCAAGTCATCAAATTCAACAGCCAGAG GACTGTATGTAAACTCCTGCTTTGCACATTGCCAAACAGAATCTCAGGCAAGCTGGTACATGGCTGACTCTCCTGTTCTTGGTCAAACGAAAATAGCAAA GGCAGTGGGTGATTGGTTTTATGACAGGAAATCTTTCCAAAAGATTGATTGTCCTTACCCTTGCAATCCAACTTGCCGTGGTTCTGCTGCTGGTGGTGGC GGTGGCGGTGGAGGAACTGTCTCAGAGGAACCAAATTTATAG
AA sequence Show only first row Show all	>Lus10033305 pacid=23172190 polypeptide=Lus10033305 locus=Lus10033305.g ID=Lus10033305.BGIv1.0 annot-version=v1.0 MAESRLLLSAKFLHLIVCLVLICLTRTESLYAPITYVTSGVSKGAVCLDGSPPAYNFDKGYGTGINSWLVQLEGGGWCHNVTSCLGRKNTRLGSSKKMGD QLAFSGIMSNRRVFNPDYYNWNRVKVRYCDGSSFTGDVQAVDPATNLHFRGARVWLAVMEDLLAKGMKNAENALLSGCSAGGLASILHCDSFRALLPMGA KVKCLSDAGYFVNVKDISGASYIQTYFNQVVTLHGSAKNLPLSCRRRLKPSSLCFFPQNVIQEVRTPVFLLNSAYDSWQIKNILAPSDADPRGSWNTCKM DLNHCAPPQIQTMQAFRKQFLKTLSKSSNSTARGLYVNSCFAHCQTESQASWYMADSPVLGQTKIAKAVGDWFYDRKSFQKIDCPYPCNPTCRGSAAGGG GGGGGTVSEEPNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19420			Pectinacetylesterase family pr...		Lus10033305 [exp]	0	1
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10017288 [exp]	1.0	0.9592
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10025771 [exp]	1.4	0.9490
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10040460 [exp]	1.7	0.9341
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10018898 [exp]	3.5	0.9020
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10006308 [exp]	3.9	0.9051
AT1G74300			alpha/beta-Hydrolases superfam...		Lus10032809 [exp]	5.5	0.8718
AT1G26810		GALT1	galactosyltransferase1 (.1)		Lus10036756 [exp]	5.7	0.8673
AT5G49130			MATE efflux family protein (.1...		Lus10009788 [exp]	6.5	0.8950
AT4G19185			nodulin MtN21 /EamA-like trans...		Lus10035694 [exp]	6.9	0.8942
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10032894 [exp]	8.2	0.9147

Compare expression of checked genes

Lus10033305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.