Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45340 733 / 0 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT4G19230 729 / 0 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT3G19270 553 / 0 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT2G29090 548 / 0 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT1G05160 269 / 8e-85 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) AT2G32440 266 / 9e-84 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT5G05690 262 / 3e-82 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT2G42850 260 / 2e-81 CYP718 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) AT1G19630 257 / 3e-80 CYP722A1 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) AT5G38970 245 / 7e-76 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034768 [exp] 946 / 0 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10035685 [exp] 788 / 0 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10042652 [exp] 528 / 0 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10021725 [exp] 523 / 0 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10019858 [exp] 504 / 3e-176 AT3G19270 643 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10016515 [exp] 503 / 5e-176 AT2G29090 554 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Lus10037273 [exp] 488 / 1e-171 AT4G19230 461 / 2e-161 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10012675 [exp] 491 / 2e-171 AT3G19270 586 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10040785 [exp] 416 / 6e-134 AT1G07510 1078 / 0.0 FTSH protease 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G235400 [exp] 746 / 0 AT4G19230 778 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Potri.004G140900 [exp] 558 / 0 AT3G19270 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.014G029100 [exp] 557 / 0 AT3G19270 665 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.009G033900 [exp] 554 / 0 AT2G29090 677 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.001G242600 [exp] 553 / 0 AT2G29090 652 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.002G126100 [exp] 539 / 0 AT3G19270 666 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.009G101700 [exp] 535 / 0 AT3G19270 711 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.008G067500 [exp] 273 / 2e-86 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.010G189800 [exp] 270 / 4e-85 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.002G060700 [exp] 263 / 1e-82 AT2G42850 582 / 0.0 "cytochrome P450, family 718", cytochrome P450, family 718 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10033308 pacid=23172097 polypeptide=Lus10033308 locus=Lus10033308.g ID=Lus10033308.BGIv1.0 annot-version=v1.0 ATGGACGCCTCCAATTACCAAATTACCCTCCCCCTTTTCCTCTTCTCAGCCGCCGCCGTCTCTTCCTTCCTCTTCCTCCTCAACCATTTCATAAACTCCC GCCGCCGGCACCAATTGCCTCTGCCGCCGGGAACCATGGGCTGGCCGTACGTCGGCGAAACATTCCAGCTCTATTCCCAGGACCCAAACGTATTCTTCGC CTCCAAGGTGAAGAAATTCGGCTCCATTCTCAAAACCCACATCTTGGGTTGTCCTTGCGTCATGGTTTCCAGCCCTGAAGCTGCGAAATTCGTGCTGGTC ACTAAATCCAATCTCTTCAAGCCCACTTTCCCCGCCAGTAAAGAAAGGATGCTCGGCCGTCAGGCCATTTTCTTCCACCAGGGTGATTATCACTCCAAGC TGAGAAAGCTCGTTCTCCGCGCTTTCCTTCCTCAATCCATTCAGCACGCCGTTCCGCAAGTCGAATCCCTCGCTGTCCAAGCACTCCAATCCTGGGAGTC CCTTCCCCAAATCAACACTTATCTCGAAATGAAATCGTATACGTTCAATGTGGCGCTTCTGTCGATATTCGGAAAGGACGCGACGCTGTACAGGGAGGAT TTGAAGAGGTGTTACTACATCCTGGAAAAAGGGTACAATTCAATGCCAGTGAACCTTCCGGGGACTCTGTTCCACAAGGCTATGAAAGCAAGGAAGGAAT TGGCTTTGATCCTGGCAAAGATCATGGCAAGAAGACGGGAAATGAAGATCCAGGAGGAGGACCACAACGATCTCCTGGGCTCTTTTATGGTGGATAAAGC AGGACTCACCGACGAGCAAATCGCCGACAATGTAATCGGAGTAATCTTCGCCGCCAGGGACACAACCGCCAGTGCTCTCACATGGGTTCTCAAGTTTTTG GGAGATAACCCAACAGTTCTTCAAGCCGTCACTGAAGAGCAAGAAGAGATAAGTAGGGAAATGAGGAAGAGGGAGAAAGAAGTAATGAGCTGGGGTGATA CAAAGAAGATGCCAATAAGTTCAAGGGTGATTCAAGAAACACTGAGAGTTGCTTCCATTCTTTCTTTCACTTTCAGAGAAGCTGTTGAGGATGTTGAGTA TGAAGGGTACATGATCCCAAAAGGATGGAAAGTATTACCACTTTTCAGGAACATTCACCACAACCCAGATAACTTCTCTGATCCTGAGAAATTTGACCCT TCCAGATTCAAGGTGGCGCCGAGGGCCAATACATTCATGGCATTTGGAAGCGGGACCCACTCATGTCCTGGGAATGAGTTAGCAAAAGTGGAGATTCTGG TGCTGCTGCATCACCTGACCACTAAGTACAGGTGGTCTATGGTGGGTGACAGTAGTGGAATTCAGTATGGTCCTTTTGCTCTTCCCCAGAATGGTCTGCC CATCAAGCTTTCCTTCAAGAAATAA
AA sequence Show only first row Show all	>Lus10033308 pacid=23172097 polypeptide=Lus10033308 locus=Lus10033308.g ID=Lus10033308.BGIv1.0 annot-version=v1.0 MDASNYQITLPLFLFSAAAVSSFLFLLNHFINSRRRHQLPLPPGTMGWPYVGETFQLYSQDPNVFFASKVKKFGSILKTHILGCPCVMVSSPEAAKFVLV TKSNLFKPTFPASKERMLGRQAIFFHQGDYHSKLRKLVLRAFLPQSIQHAVPQVESLAVQALQSWESLPQINTYLEMKSYTFNVALLSIFGKDATLYRED LKRCYYILEKGYNSMPVNLPGTLFHKAMKARKELALILAKIMARRREMKIQEEDHNDLLGSFMVDKAGLTDEQIADNVIGVIFAARDTTASALTWVLKFL GDNPTVLQAVTEEQEEISREMRKREKEVMSWGDTKKMPISSRVIQETLRVASILSFTFREAVEDVEYEGYMIPKGWKVLPLFRNIHHNPDNFSDPEKFDP SRFKVAPRANTFMAFGSGTHSCPGNELAKVEILVLLHHLTTKYRWSMVGDSSGIQYGPFALPQNGLPIKLSFKK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10033308 [exp]	0	1
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10017775 [exp]	1.0	0.9812
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10003601 [exp]	6.0	0.9780
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10033889 [exp]	7.7	0.9746
AT1G32160			Protein of unknown function (D...		Lus10035392 [exp]	7.9	0.9756
AT2G18670			RING/U-box superfamily protein...		Lus10015506 [exp]	9.5	0.9736
AT1G71695			Peroxidase superfamily protein...		Lus10028689 [exp]	9.8	0.9755
AT1G71696		SOL1.4, SOL1.3,...	SUPPRESSOR OF LLP1 1, carboxyp...		Lus10028694 [exp]	11.6	0.9617
AT1G15170			MATE efflux family protein (.1...		Lus10028540 [exp]	13.3	0.9669
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10008214 [exp]	15.0	0.9725
AT5G60335			Thioesterase superfamily prote...		Lus10031971 [exp]	16.9	0.9746

Compare expression of checked genes

Lus10033308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.