Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19210 1167 / 0 ABCE2, ATRLI2 ARABIDOPSIS THALIANA RNASE L INHIBITOR PROTEIN 2, ATP-binding cassette E2, RNAse l inhibitor protein 2 (.1) AT3G13640 1027 / 0 ABCE1, ATRLI1 ATP-binding cassette E1, RNAse l inhibitor protein 1 (.1) AT4G30300 225 / 2e-70 ABCE3, ATNAP15 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 15, ATP-binding cassette E3, non-intrinsic ABC protein 15 (.1) AT5G64840 79 / 3e-15 ABCF5, ATGCN5 ATP-binding cassette F5, general control non-repressible 5 (.1) AT5G61700 64 / 3e-10 ABCA12, ATATH16 ARABIDOPSIS THALIANA ABC2 HOMOLOG 16, ATP-binding cassette A12, ABC2 homolog 16 (.1) AT5G09930 62 / 9e-10 ABCF2, ATGCN2 ATP-binding cassette F2, ABC transporter family protein (.1) AT4G01830 62 / 1e-09 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT5G46540 61 / 2e-09 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT3G55100 60 / 5e-09 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT5G61740 59 / 8e-09 ABCA10, ATATH14 ARABIDOPSIS THALIANA ABC2 HOMOLOG 14, ATP-binding cassette A10, ABC2 homolog 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034771 [exp] 1250 / 0 AT4G19210 1167 / 0.0 ARABIDOPSIS THALIANA RNASE L INHIBITOR PROTEIN 2, ATP-binding cassette E2, RNAse l inhibitor protein 2 (.1) Lus10035195 [exp] 67 / 5e-12 AT5G14100 333 / 2e-115 ARABIDOPSIS THALIANANON-INTRINSIC ABC PROTEIN 14, ATP-binding cassette I11, non-intrinsic ABC protein 14 (.1) Lus10004496 [exp] 63 / 4e-10 AT2G13610 729 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10005798 [exp] 62 / 9e-10 AT5G64840 1049 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10000827 [exp] 59 / 2e-09 AT4G33460 362 / 5e-127 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) Lus10006804 [exp] 61 / 3e-09 AT5G64840 1050 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10004583 [exp] 61 / 3e-09 AT4G18050 1660 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Lus10029905 [exp] 61 / 3e-09 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10004519 [exp] 57 / 3e-08 AT1G02520 636 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G235900 [exp] 1191 / 0 AT4G19210 1170 / 0.0 ARABIDOPSIS THALIANA RNASE L INHIBITOR PROTEIN 2, ATP-binding cassette E2, RNAse l inhibitor protein 2 (.1) Potri.003G045700 [exp] 1180 / 0 AT4G19210 1157 / 0.0 ARABIDOPSIS THALIANA RNASE L INHIBITOR PROTEIN 2, ATP-binding cassette E2, RNAse l inhibitor protein 2 (.1) Potri.007G080600 [exp] 82 / 3e-16 AT5G64840 936 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Potri.005G064300 [exp] 64 / 1e-10 AT2G13610 900 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.005G084800 [exp] 64 / 3e-10 AT5G64840 983 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Potri.001G354900 [exp] 61 / 3e-09 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.017G067804 [exp] 57 / 8e-09 AT5G14100 346 / 1e-120 ARABIDOPSIS THALIANANON-INTRINSIC ABC PROTEIN 14, ATP-binding cassette I11, non-intrinsic ABC protein 14 (.1) Potri.007G104801 [exp] 58 / 1e-08 AT2G13610 949 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.015G063400 [exp] 58 / 2e-08 AT3G47780 1145 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Potri.005G062800 [exp] 56 / 2e-08 AT4G33460 346 / 5e-121 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0344 [flax] [poplar] 4Fe-4S PF04068 [flax] [poplar] RLI Possible Fer4-like domain in RNase L inhibitor, RLI CL0344 [flax] [poplar] 4Fe-4S PF00037 [flax] [poplar] Fer4 4Fe-4S binding domain CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10033309 pacid=23172120 polypeptide=Lus10033309 locus=Lus10033309.g ID=Lus10033309.BGIv1.0 annot-version=v1.0 ATGTCGGACCGATTGACGCGAATTGCAATCGTCACAGGCGATCGGTGCAAGCCCAAAAAGTGCCGCCAGGAATGCAAAAAGAGCTGTCCAGTCGTCAAAA CTGGGAAGCTCTGTATTGAGGTTGCTTCTGCATCTAAGATAGCTTTCATCTCTGAGGAGTTATGTATCGGTTGCGGTATCTGTGTTAAGAAATGTCCTTT TGAGGCGATTCAAATCATTAATCTGCCTAAGGATTTGGAGAAGGATACAACTCACCGTTATGGTCCCAATACCTTCAAGTTACACAGGCTGCCAGTGCCA AGGCCTGGTCAAGTTCTTGGTTTGGTTGGAACCAATGGTATCGGGAAGTCAACAGCACTCAAAGTGTTGGCCGGAAAACTTAAGCCGAATTTGGGTCGCT TTAATAGCCCCCCAGATTGGCAAGAGATTTTGACTCACTTTAGAGGGTCGGAGCTCCAGAACTACTTTACCCGTATCTTGGAAGACAACTTGAAGGCTAT CATAAAACCTCAATATGTTGACCACATTCCTAAAGCCGTCCAAGGAAATGTAGGACAGGTGCTTGAACAGAAAGATGAAAGAGGGATGAAAGAAGAGTTG TGTGCTGATCTTCAGCTGAACCAGGTCATCGATCGCAATGTCGGTGATTTATCTGGTGGAGAGCTACAAAGATTTGCCATTGCTGTTGTTGCCATACAAA GTGCCGAGATCTACATGTTTGATGAACCTTCCAGTTACCTTGATGTCAAACAGAGGCTCAAAGCTGCCCAAGTTATCAGATCTCTACTCCGCCCCAATAG TTATGTGATTGTGGTGGAGCATGATCTCAGCGTACTGGATTACTTATCTGATTTTATCTGCTGCTTGTATGGAAAGCCTGGTGCCTATGGGGTTGTAACC TTACCGTTCTCTGTTAGAGAAGGAATCAATATATTCCTGGCTGGATTTGTTCCTACAGAAAATCTGAGATTCCGTGATGAATCACTTACATTTAGGGTAG CTGAGACGCCCCAGGAGAATGCCGAAGAGATTGAAACCTATGCACGATATAGGTACCCAGCAATGTCTAAAACTCAGGGTGGTTTTAGGCTTCGTGTTGC TGAGGGCGAGTTCACTGATTCTCAGATTGTTGTGATGTTGGGAGAAAATGGCACAGGGAAGACAACTTTTATTCGGATGCTGGCTGGTCTACTCAAACCT GATACTGTGGAAGGATCTGAAGCAGATATACCTGAGTTCAATGTTTCGTACAAGCCCCAAAAGATCAGTCCCAAGTTCCAATCTACTGTTAGGCATTTGC TACATCAGAAGATCCGCGACTCTTACATGCATCCTCAATTTATGTCAGATGTCATGAAACCGCTACTTATTGAACAGCTGATGGATCAAGAAGTAGTCAA TCTATCTGGCGGAGAATTGCAAAGGGTTGCATTATGTCTTTGTCTAGGAAAGCCAGCGGACATTTATCTGATAGATGAGCCTAGTGCATATCTTGATTCT GAGCAGCGTATTGTTGCTTCCAAAGTCATCAAAAGGTTCATTCTCCATGCAAAGAAGACAGCATTTGTGGTGGAACACGATTTTATCATGGCAACTTATC TGGCTGATCGTGTTATTGTATACGAGGGACAGCCATCTATAGATTGTACTGCAAACTCTCCTCAGTCCTTGTTAACTGGCATGAACCTTTTCCTATCACA CCTAGACATAACGTTTAGGCGAGATCCAACTAATTTCCGACCAAGGATCAACAAGTTGGACTCCACAAAAGACAGGGAGCAGAAGAATGCTGGATCGTAC TATTACTTAGATGATTGA
AA sequence Show only first row Show all	>Lus10033309 pacid=23172120 polypeptide=Lus10033309 locus=Lus10033309.g ID=Lus10033309.BGIv1.0 annot-version=v1.0 MSDRLTRIAIVTGDRCKPKKCRQECKKSCPVVKTGKLCIEVASASKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLEKDTTHRYGPNTFKLHRLPVP RPGQVLGLVGTNGIGKSTALKVLAGKLKPNLGRFNSPPDWQEILTHFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLEQKDERGMKEEL CADLQLNQVIDRNVGDLSGGELQRFAIAVVAIQSAEIYMFDEPSSYLDVKQRLKAAQVIRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT LPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQENAEEIETYARYRYPAMSKTQGGFRLRVAEGEFTDSQIVVMLGENGTGKTTFIRMLAGLLKP DTVEGSEADIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYMHPQFMSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS EQRIVASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSIDCTANSPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDREQKNAGSY YYLDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Lus10033309 [exp]	0	1
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Lus10034771 [exp]	1.0	0.8987
AT2G40700			P-loop containing nucleoside t...		Lus10012874 [exp]	1.4	0.8605
AT2G03640			Nuclear transport factor 2 (NT...		Lus10026668 [exp]	2.4	0.8409
AT1G72550			tRNA synthetase beta subunit f...		Lus10020531 [exp]	4.4	0.8137
AT3G54190			Transducin/WD40 repeat-like su...		Lus10035613 [exp]	5.3	0.8390
AT3G10650		AtNUP1	unknown protein		Lus10028861 [exp]	7.1	0.8413
AT2G40700			P-loop containing nucleoside t...		Lus10030523 [exp]	10.2	0.8487
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Lus10040306 [exp]	12.5	0.8545
AT4G05420		DDB1A	damaged DNA binding protein 1A...		Lus10033455 [exp]	14.1	0.8358
AT2G03820			nonsense-mediated mRNA decay N...		Lus10023975 [exp]	17.3	0.7695

Compare expression of checked genes

Lus10033309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.