Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037277 [exp] 40 / 0.0005 ND 40 / 1e-04
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033310 pacid=23172102 polypeptide=Lus10033310 locus=Lus10033310.g ID=Lus10033310.BGIv1.0 annot-version=v1.0 ATGGGAGGTGGGAAGGACAAGCATCACGATGAGCAAGATAAGGGTTTGTTTGGGCATTTCGGAGGCCACGGAGCTCCACCTGGTGGATACTACCCTCAGC AAGGAGGCTACCCTGGTGGTCCTCCTCCACCGCATGGCTACCCTCAGGCTCCCGGCGGTTACCCTCCGCAAGGCTACCCGCCTCAGCAAGGTTATCCTCC GCAAGGGTATCCTCCTCAGCATGGCTACCCTCCTCAAGGTTACCCTCCTCAGCAACACGGTTACCCTTCTGGCCCCTCTCACCATACAGGACACGGTGGC ATAGGGGCAGTGATTGCTGGCGGTGCCGCAGCAGCTGCTGCTGCTGCAATGGGTGCTCACCATGTCAGCCATAGTGGTGGCCATGGTGGTGCTCACTACG GAGGCATGGGCATGGGCGGGTATGGACATGGACATGGACACGGACACGGTGGAAAGTTCAAGCAGGGGAAGTTTAAGCATGGTGGTGGCAAGTTCAAACA CGGCAAGCATGGAAAGCATGGTGGAATGTTCGGAGGAGGCAAGTTCAAGAAGTGGAAATAA
AA sequence Show only first row Show all	>Lus10033310 pacid=23172102 polypeptide=Lus10033310 locus=Lus10033310.g ID=Lus10033310.BGIv1.0 annot-version=v1.0 MGGGKDKHHDEQDKGLFGHFGGHGAPPGGYYPQQGGYPGGPPPPHGYPQAPGGYPPQGYPPQQGYPPQGYPPQHGYPPQGYPPQQHGYPSGPSHHTGHGG IGAVIAGGAAAAAAAAMGAHHVSHSGGHGGAHYGGMGMGGYGHGHGHGHGGKFKQGKFKHGGGKFKHGKHGKHGGMFGGGKFKKWK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10033310 [exp]	0	1
AT5G51570			SPFH/Band 7/PHB domain-contain...		Lus10015032 [exp]	1.4	0.9372
AT3G61200			Thioesterase superfamily prote...		Lus10000809 [exp]	1.4	0.9217
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10018250 [exp]	2.4	0.9139
AT4G33940			RING/U-box superfamily protein...		Lus10012062 [exp]	3.5	0.9128
AT2G46550			unknown protein		Lus10023163 [exp]	4.0	0.8900
AT5G56150		UBC30	ubiquitin-conjugating enzyme 3...		Lus10016670 [exp]	4.2	0.8955
AT5G07250		ATRBL3	RHOMBOID-like protein 3 (.1.2)		Lus10027436 [exp]	4.6	0.8944
AT1G66400		CML23	calmodulin like 23 (.1)		Lus10028516 [exp]	5.0	0.8957
AT2G01680			Ankyrin repeat family protein ...		Lus10021814 [exp]	6.2	0.8719
AT5G51570			SPFH/Band 7/PHB domain-contain...		Lus10038907 [exp]	7.6	0.8603

Compare expression of checked genes

Lus10033310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.