Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35605 68 / 6e-16 SWIB/MDM2 domain superfamily protein (.1) AT1G31760 65 / 7e-15 SWIB/MDM2 domain superfamily protein (.1) AT3G03590 63 / 8e-14 SWIB/MDM2 domain superfamily protein (.1) AT4G34290 58 / 8e-12 SWIB/MDM2 domain superfamily protein (.1) AT2G14880 54 / 4e-10 SWIB/MDM2 domain superfamily protein (.1) AT1G17510 50 / 4e-09 unknown protein AT4G26810 40 / 2e-05 SWIB/MDM2 domain superfamily protein (.1.2) AT3G19080 39 / 0.0003 SWIB complex BAF60b domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034774 [exp] 221 / 1e-76 AT2G35605 68 / 6e-16 SWIB/MDM2 domain superfamily protein (.1) Lus10005667 [exp] 65 / 2e-14 AT3G03590 118 / 4e-35 SWIB/MDM2 domain superfamily protein (.1) Lus10013893 [exp] 57 / 2e-11 AT2G14880 143 / 7e-45 SWIB/MDM2 domain superfamily protein (.1) Lus10002106 [exp] 55 / 3e-11 AT4G34290 109 / 2e-32 SWIB/MDM2 domain superfamily protein (.1) Lus10019640 [exp] 45 / 1e-06 AT3G19080 256 / 2e-81 SWIB complex BAF60b domain-containing protein (.1) Lus10009333 [exp] 44 / 7e-06 AT3G19080 266 / 4e-87 SWIB complex BAF60b domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G078400 [exp] 149 / 8e-48 AT2G35605 66 / 6e-15 SWIB/MDM2 domain superfamily protein (.1) Potri.013G070600 [exp] 63 / 1e-13 AT2G35605 108 / 2e-31 SWIB/MDM2 domain superfamily protein (.1) Potri.009G092200 [exp] 61 / 7e-13 AT2G14880 169 / 7e-55 SWIB/MDM2 domain superfamily protein (.1) Potri.001G297400 [exp] 59 / 3e-12 AT2G14880 142 / 3e-44 SWIB/MDM2 domain superfamily protein (.1) Potri.005G134500 [exp] 44 / 4e-06 AT3G19080 226 / 3e-70 SWIB complex BAF60b domain-containing protein (.1) Potri.015G137600 [exp] 37 / 0.0006 AT4G26810 181 / 1e-60 SWIB/MDM2 domain superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02201 [flax] [poplar] SWIB SWIB/MDM2 domain
Representative CDS sequence Show only first row Show all	>Lus10033312 pacid=23172171 polypeptide=Lus10033312 locus=Lus10033312.g ID=Lus10033312.BGIv1.0 annot-version=v1.0 ATGGCGGTAGGAAACACCAGAATGTTGCTGAAGAAGGCGTTGATCCGCCACCCTGCCTACGCATCCAAAGGAAGCATCGTCAATTCCCAGATCAAAGCCA AGGTCATCCCACCCTCTTCTTCTCAGTTGGGGAAGTTCCTCGGGATTCCTGAACCCGCTCGCTCCGATCTTACCAAGCTCATCTCCCGCTTCATTAAGCT CAACAATCGCCAGAATCCCGGAATGAAGAAAGATCATCTCACTGAAGACAAGCTGAAATCTTTGCTGGCTGGGAAGGAAAGAATTGGTATCCCTGAGATA GCCAAGTTGCTTTCCCAACAATTTGTCAAATCTTGA
AA sequence Show only first row Show all	>Lus10033312 pacid=23172171 polypeptide=Lus10033312 locus=Lus10033312.g ID=Lus10033312.BGIv1.0 annot-version=v1.0 MAVGNTRMLLKKALIRHPAYASKGSIVNSQIKAKVIPPSSSQLGKFLGIPEPARSDLTKLISRFIKLNNRQNPGMKKDHLTEDKLKSLLAGKERIGIPEI AKLLSQQFVKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35605			SWIB/MDM2 domain superfamily p...		Lus10033312 [exp]	0	1
AT3G12390			Nascent polypeptide-associated...		Lus10026133 [exp]	3.7	0.7877
AT3G07640			unknown protein		Lus10041098 [exp]	4.7	0.7628
AT2G35605			SWIB/MDM2 domain superfamily p...		Lus10034774 [exp]	7.1	0.7124
AT5G20180			Ribosomal protein L36 (.1.2)		Lus10019412 [exp]	7.1	0.7622
AT3G26360			Ribosomal protein S21 family p...		Lus10006466 [exp]	7.9	0.7271
AT3G06050		PRXIIF, ATPRXII...	peroxiredoxin IIF (.1)		Lus10021932 [exp]	9.4	0.7216
AT1G55205			unknown protein		Lus10023655 [exp]	11.0	0.7318
AT3G27100			unknown protein		Lus10012534 [exp]	18.7	0.7464
AT2G20490		NOP10, EDA27	EMBRYO SAC DEVELOPMENT ARREST ...		Lus10033907 [exp]	20.9	0.7283
AT5G24165			unknown protein		Lus10014921 [exp]	22.8	0.7016

Compare expression of checked genes

Lus10033312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.