Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17930 72 / 1e-13 Aminotransferase-like, plant mobile domain family protein (.1) AT2G25010 61 / 7e-10 Aminotransferase-like, plant mobile domain family protein (.1) AT2G04865 59 / 2e-09 Aminotransferase-like, plant mobile domain family protein (.1) AT1G48120 59 / 2e-09 hydrolases;protein serine/threonine phosphatases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005957 [exp] 318 / 8e-108 AT1G48120 75 / 1e-14 hydrolases;protein serine/threonine phosphatases (.1) Lus10039393 [exp] 274 / 5e-91 AT1G17930 73 / 3e-14 Aminotransferase-like, plant mobile domain family protein (.1) Lus10022091 [exp] 291 / 3e-90 AT3G23070 860 / 0.0 CRM family member 3A (.1) Lus10021566 [exp] 254 / 2e-83 AT1G17930 54 / 4e-08 Aminotransferase-like, plant mobile domain family protein (.1) Lus10006165 [exp] 246 / 2e-80 AT5G45260 66 / 5e-12 SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) Lus10005495 [exp] 226 / 7e-73 AT1G17930 54 / 2e-08 Aminotransferase-like, plant mobile domain family protein (.1) Lus10004830 [exp] 222 / 3e-71 AT1G17930 48 / 4e-06 Aminotransferase-like, plant mobile domain family protein (.1) Lus10005482 [exp] 194 / 1e-61 AT1G17930 41 / 1e-04 Aminotransferase-like, plant mobile domain family protein (.1) Lus10000686 [exp] 192 / 2e-60 AT1G17930 87 / 3e-20 Aminotransferase-like, plant mobile domain family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10033313 pacid=23172123 polypeptide=Lus10033313 locus=Lus10033313.g ID=Lus10033313.BGIv1.0 annot-version=v1.0 ATGGAAACTATTAGTAGGTTTGTAGAGCACGCGAATACTGCTTCGGATCGAAGAGAAGCAGATAAGAGGAGGAACAAGAAGAAAAATAAGAAGAAGAAGA AACAACAAATCTACGAGACCACCGAGTCTTTCCCCCTTATTAGGATTCTGGTATGCCACGATGGACATGGTAGACCTCCATCCCCCGATATAACTAGGGC TCTACGTATCGATCATGAGTATTTGAAGTTTCCAGTTGGACGTGCTGTAGGTGGGGATGCCCGATACCCTTGGCTGACGGGTACCAAGATGCATGAGGGG AACGGTTTAGTGGATCCGGATGCGTACATGGTCTTCTTGTTTTTTCTATTTGGTTCAACGATGTTCACTGATAAGTCAGCCGATCGGACTCGTCTCGTGT TACGTGAGTACTTGATGGGCTGTGTTTTCACGGTGTCACGATTTGCTTGGGGGACGGGTGCGCTAGCATTGTTGTACCACGAGCTTGGTAAGGCTAGCCG CCCGAAGTGCAAGGGGATGGCAGGCTGTGCTTCTCTACTTCAATCTTGGATTCACGAGTGTTTACCTAGTACTCATGCTGCTAGAGTAGTGTGCCAGGAG TGGAGCGAGGTAGAGGCCTTAGTTGGGCGGTGGAGTAGTGGCGAGCAGTCTGAGCGGTCCTATGAGTTCATGCACCGTAGGTTGGAGTATTACCAGCATT TTCTTGATGATATGACCACACGTGATGTGACCTGGCTGCCTTTCGGCCCACGACCCGAGGTAGAAGTTCCTGAATCAGCGATTCGTGGAGTGATTCGTTT TGCTACCACTGCAGAGTACTATGATCTGACTCGTATCGTTAAACAGTTTGGCTACGCGCAGATGATTTCAGGGGTTATCCCTGCTCCTGTCAAGAAAATT AGGTCAGCTAAACCTAACAGATACGTGGTTGAGTGGGCTGACACTACCGATAGAGCATGGAGGGACGAAGACTGGTCTCAACTGATGTCATTTCAGTGTT TTTTTCGACGTGTCGATGACGTGATTGATATCGATCAGTGA
AA sequence Show only first row Show all	>Lus10033313 pacid=23172123 polypeptide=Lus10033313 locus=Lus10033313.g ID=Lus10033313.BGIv1.0 annot-version=v1.0 METISRFVEHANTASDRREADKRRNKKKNKKKKKQQIYETTESFPLIRILVCHDGHGRPPSPDITRALRIDHEYLKFPVGRAVGGDARYPWLTGTKMHEG NGLVDPDAYMVFLFFLFGSTMFTDKSADRTRLVLREYLMGCVFTVSRFAWGTGALALLYHELGKASRPKCKGMAGCASLLQSWIHECLPSTHAARVVCQE WSEVEALVGRWSSGEQSERSYEFMHRRLEYYQHFLDDMTTRDVTWLPFGPRPEVEVPESAIRGVIRFATTAEYYDLTRIVKQFGYAQMISGVIPAPVKKI RSAKPNRYVVEWADTTDRAWRDEDWSQLMSFQCFFRRVDDVIDIDQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17930			Aminotransferase-like, plant m...		Lus10033313 [exp]	0	1
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10040834 [exp]	6.9	0.7072
AT2G34930			disease resistance family prot...		Lus10039522 [exp]	9.2	0.6657
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10018721 [exp]	18.8	0.7045
					Lus10005948 [exp]	21.5	0.6662
AT3G52500			Eukaryotic aspartyl protease f...		Lus10029408 [exp]	60.4	0.6315
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Lus10027709 [exp]	105.2	0.5307
AT4G21550	B3	HSI2-L2, VAL3	VP1/ABI3-like 3 (.1)		Lus10014169 [exp]	111.3	0.5834
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10034432 [exp]	111.7	0.5898
AT5G38700			unknown protein		Lus10010019 [exp]	137.8	0.5704
AT2G26450			Plant invertase/pectin methyle...		Lus10002976 [exp]	198.8	0.5470

Compare expression of checked genes

Lus10033313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.