Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31770 905 / 0 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT3G25620 661 / 0 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT4G27420 580 / 0 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT5G06530 558 / 0 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT3G52310 543 / 0 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT1G71960 513 / 4e-176 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) AT3G13220 458 / 2e-154 MSR02, AtABCG26, ABCG26, WBC27 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) AT2G01320 290 / 6e-89 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT3G21090 236 / 4e-69 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT3G55130 236 / 7e-69 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034775 [exp] 1099 / 0 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10035692 [exp] 1034 / 0 AT1G31770 1001 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10037283 [exp] 1018 / 0 AT1G31770 984 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10034387 [exp] 659 / 0 AT3G25620 791 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Lus10025596 [exp] 637 / 0 AT4G27420 687 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10029635 [exp] 626 / 0 AT4G27420 698 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10025597 [exp] 617 / 0 AT4G27420 707 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10033315 [exp] 586 / 0 AT1G31770 551 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10015994 [exp] 543 / 0 AT5G06530 1033 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G236500 [exp] 994 / 0 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.003G046800 [exp] 993 / 0 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.010G131900 [exp] 706 / 0 AT3G25620 852 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Potri.001G404000 [exp] 647 / 0 AT4G27420 690 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.011G123200 [exp] 619 / 0 AT4G27420 737 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.016G065900 [exp] 566 / 0 AT5G06530 1139 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.013G111900 [exp] 523 / 3e-180 AT1G71960 795 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.019G083000 [exp] 516 / 4e-177 AT1G71960 782 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.006G199500 [exp] 509 / 1e-173 AT5G06530 1013 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.001G370600 [exp] 474 / 1e-160 AT3G13220 1012 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10033314 pacid=23172231 polypeptide=Lus10033314 locus=Lus10033314.g ID=Lus10033314.BGIv1.0 annot-version=v1.0 ATGGTTTGCCCAGGGGAGATTCTAGCAATGTTGGGTCCATCAGGCAGCGGTAAAACCACCCTCTTAACTGCACTTGGTGGTCGGCTCAATGGTAAGTTGT CCGGAAAGATCACATACAACGGACAGCCTTTCTCTGGAATCATAAAGAGACGCACAGGATTTGTTGCCCAAGACGATGTCTTGTATCCACATCTTACAGT GGCCGAAACTCTCATGTTCACTGCACTGTTAAGGCTACCAAAAACCTTAACACGTGAAGAGAAAGCACAGCACGTGGAACGAGTCATTGTTGAATTGGGA TTGACCCGCTGCAGAAACAGCATGATAGGTGGTCCACTCTTTAGAGGAATCTCAGGAGGAGAGAAGAAAAGGGTGAGCATTGGTCGGGAAATGCTAATAA ATCCAAGCTTGCTACTTCTGGATGAGCCTACGTCAGGCTTGGACTCAACCACAGCTCAACGAATCCTGACAACCATAAAACGTCTTGCTGACGGAGGGAG AACAGTAGTCACCACCATTCACCAGCCTTCAAGCCGACTATACTACATGTTTGATAAGGTAGTTTTGCTCTCTGAGGGCTCACCAATCTATTATGGTCCT GCATCAGCTGCCCTGGATTACTTTTCCTCCATCGGCTTCTCAACATCCATGACCGTCAATCCATCTGACCTTTTACTTGACCTGGCTAACGGTATTGCTC CGGATGCTAGGAATGGAAGTGAACAGGGTGAGAACACAGAGAAGGAACAAAAGCTGGTAAGGGAAGCTCTAATTTCTGCTTACGAGAAGAACATTTTCAC AAGTCTAAAAGCAGAACTTTACAACCTGGATATGAGTAACTTCAGCTACACAAAAGATAACCCCGCAAGAAGAAATATCAAGTCAGAGGAGTGGTCCACA AGCTGGTGGCATCAGTTCAAGGTGTTATTCCAGAGGGGATTGAGGGAGCGAAGGTTTGAATCATTCAACAAGCTGAGAATTTTCCAAGTCATCAGTGTTG CTGTACTTGGAGGTCTCCTCTGGTGGCAAACTCCAACATCTCACATTGAGGACCGTATAGCACTACTGTTCTTCTTCTCAGTGTTTTGGGGCTTCTATCC TCTATACAATGCAGTTTTCACATTCCCCCAAGAAAGAAGAATGCTAATAAAGGAAAGAGCATCTGGAATGTATCATCTCTCATCCTACTTTCTAGCCAGA ACCGTCGGCGACCTGCCATTGGAGCTTGCACTTCCTACAGCCTTTGTGTTCATACTTTATTGGATGGGCGGGCTTAAAGCTGATCCCGTAACTTTCATAT TGTCCCTAATCGCAGTTCTCTACAGTGTCCTTGTCTCCCAAAGTCTAGGATTAGCCATTGGTGCTATTCTTATGGACATTAAAAAAGCCACTACATTAGC TTCAGTCACAACTTTGGTATTCCTAATTGCTGGTGGGTACTACGTGCAACAAATACCACCATTTATAGTTTGGCTTAAGTACCTGAGCTACAGTTACTAC TGCTACAAGCTTCTGCTGGGAGTTCAATACAAAGAGGACGATGTTTACGAGTGTTCAAAGGGAGTCCTATGCAGGGTTGGAGACTATCCTGCCATCAAAT CAATGGGGTTGGACAATTTGTGGATGGATGTGTGCATTATGGCGTTGATGTTGGTAGGATATCGACTCATTGCTTATTTCGCACTTCATCGAGTACAACT GAGGTAA
AA sequence Show only first row Show all	>Lus10033314 pacid=23172231 polypeptide=Lus10033314 locus=Lus10033314.g ID=Lus10033314.BGIv1.0 annot-version=v1.0 MVCPGEILAMLGPSGSGKTTLLTALGGRLNGKLSGKITYNGQPFSGIIKRRTGFVAQDDVLYPHLTVAETLMFTALLRLPKTLTREEKAQHVERVIVELG LTRCRNSMIGGPLFRGISGGEKKRVSIGREMLINPSLLLLDEPTSGLDSTTAQRILTTIKRLADGGRTVVTTIHQPSSRLYYMFDKVVLLSEGSPIYYGP ASAALDYFSSIGFSTSMTVNPSDLLLDLANGIAPDARNGSEQGENTEKEQKLVREALISAYEKNIFTSLKAELYNLDMSNFSYTKDNPARRNIKSEEWST SWWHQFKVLFQRGLRERRFESFNKLRIFQVISVAVLGGLLWWQTPTSHIEDRIALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERASGMYHLSSYFLAR TVGDLPLELALPTAFVFILYWMGGLKADPVTFILSLIAVLYSVLVSQSLGLAIGAILMDIKKATTLASVTTLVFLIAGGYYVQQIPPFIVWLKYLSYSYY CYKLLLGVQYKEDDVYECSKGVLCRVGDYPAIKSMGLDNLWMDVCIMALMLVGYRLIAYFALHRVQLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10033314 [exp]	0	1
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10033315 [exp]	1.0	0.8206
AT2G28830		AtPUB12	PLANT U-BOX 12 (.1)		Lus10014221 [exp]	31.0	0.6632
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10040592 [exp]	92.7	0.6344
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10031582 [exp]	94.4	0.5856
					Lus10040545 [exp]	142.8	0.5956
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10013551 [exp]	161.2	0.6050
AT5G38880			unknown protein		Lus10034622 [exp]	241.4	0.5772

Compare expression of checked genes

Lus10033314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.