Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31770 551 / 0 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT3G25620 387 / 7e-132 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT4G27420 379 / 2e-126 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT5G06530 325 / 6e-105 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT3G52310 326 / 3e-104 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT1G71960 322 / 5e-104 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) AT3G13220 299 / 4e-95 MSR02, AtABCG26, ABCG26, WBC27 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) AT3G55100 214 / 3e-63 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT1G17840 213 / 3e-62 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT2G37360 211 / 4e-61 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034775 [exp] 742 / 0 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10035692 [exp] 620 / 0 AT1G31770 1001 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10037283 [exp] 616 / 0 AT1G31770 984 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10033314 [exp] 587 / 0 AT1G31770 941 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10025596 [exp] 375 / 1e-124 AT4G27420 687 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10034387 [exp] 362 / 3e-119 AT3G25620 791 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Lus10025597 [exp] 352 / 7e-116 AT4G27420 707 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10029635 [exp] 348 / 1e-114 AT4G27420 698 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10015994 [exp] 317 / 1e-102 AT5G06530 1033 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G236500 [exp] 633 / 0 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.003G046800 [exp] 622 / 0 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.010G131900 [exp] 406 / 1e-136 AT3G25620 852 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Potri.001G404000 [exp] 379 / 6e-127 AT4G27420 690 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.011G123200 [exp] 373 / 2e-124 AT4G27420 737 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.016G065900 [exp] 336 / 1e-108 AT5G06530 1139 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.019G083000 [exp] 320 / 2e-103 AT1G71960 782 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.013G111900 [exp] 320 / 2e-103 AT1G71960 795 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.001G370600 [exp] 313 / 4e-100 AT3G13220 1012 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) Potri.006G199500 [exp] 306 / 3e-97 AT5G06530 1013 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10033315 pacid=23172144 polypeptide=Lus10033315 locus=Lus10033315.g ID=Lus10033315.BGIv1.0 annot-version=v1.0 ATGCCTGTCAACTGCGTTGCCCCAAAACCTGAGTATGACAGCAGTGCCCCGGTGGATGGACTTACAGGAAGGACTGAACCCAATAGTATGGGTATGGTTT CGTATGCAGTACAACCCGACCCACAATCTGACATTCAACTCAGAGTATATCCTGTAACTTTGAAGTTTGAGGAGGCGGTCTACAAAATTAAACTGGAAGA GAAAGGATTGTGCTGTGGAGGTACATGGCGCAGTAAGGAAAAAACCATACTGAACGGGATAGCAGGAATGGTTTGCCCAGGGGAGATTCTGGCAATGTTG GGTCCATCAGGAAGCGGCAAAACCACCCTCTTAACTGCCCTTGGTGGTCGGCTCAATGGTAAGTTGTCCGGAAAGATCACATACAACGGACAGCCTTTCT CTGGAATCATAAAGAGACGCACAGGATTTGTTGCCCAAGACGATGTCTTGTATCCACATCTTACAGTGGCCGAAACTCTCATGTTCACTGCACTGTTAAG GCTACCAAAAACCTTAACACGTGAAGAGAAAGCACAGCACGTGGAACGAGTCGTTGTTGAGTTGGGATTGACCCGCTGCAGAAACAGCATGATAGGTGGT CCACTCTTTAGAGGAATCTCAGGAGGAGAAAAGAAAAGGGTGAGCATTGGTCAAGAAATGCTAATAAATCCAAGCTTGCTACTTCTGGATGAGCCTACGT CAGGCTTGGACTCAACCACAGCTCAACGAATCCTGACAACCATAAAACGTCTTGCTGACGGAGGGAGAACAGTAGTCACCACCATTCACCAGCCTTCAAG CCGACTATACTACATGTTTGATAAGGTAGTTTTGCTCTCTGAGGGCTCACCAATCTATTATGGTCCTGCATCAGCTGCCCTGGATTACTTTTCCTCCATC GGCTTCTCAACATCCATGACCGTCAATCCATCTGACCTTTTACTTGACCTGGCTAACGGTATTGCTCCGGATGCTAGGAATGGAAGTGAACAGGGTGAGA ACACAGAGAAGGAACAAAAGCTGGTAAGGGAAGCTCTAATTTCTGCTTACGAGAAGAACATTTTCACAAGTCTAAAAGCAGAACTTTACAACCTGGATAT GAGTAACTTCAGCTACACAAAAGATAACCCCGCAAGTATGCAGAAGAAATATCAAGTCAGAGGAGTGGTCCACAAGCTGGTGGCATCAGTTCAAGGTGTT ATTCCAGAGGGGATTGAGGGAGCGAAGGTTTGA
AA sequence Show only first row Show all	>Lus10033315 pacid=23172144 polypeptide=Lus10033315 locus=Lus10033315.g ID=Lus10033315.BGIv1.0 annot-version=v1.0 MPVNCVAPKPEYDSSAPVDGLTGRTEPNSMGMVSYAVQPDPQSDIQLRVYPVTLKFEEAVYKIKLEEKGLCCGGTWRSKEKTILNGIAGMVCPGEILAML GPSGSGKTTLLTALGGRLNGKLSGKITYNGQPFSGIIKRRTGFVAQDDVLYPHLTVAETLMFTALLRLPKTLTREEKAQHVERVVVELGLTRCRNSMIGG PLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRILTTIKRLADGGRTVVTTIHQPSSRLYYMFDKVVLLSEGSPIYYGPASAALDYFSSI GFSTSMTVNPSDLLLDLANGIAPDARNGSEQGENTEKEQKLVREALISAYEKNIFTSLKAELYNLDMSNFSYTKDNPASMQKKYQVRGVVHKLVASVQGV IPEGIEGAKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10033315 [exp]	0	1
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10033314 [exp]	1.0	0.8206
AT5G42200			RING/U-box superfamily protein...		Lus10021842 [exp]	7.7	0.5443
AT3G30530	bZIP	ATBZIP42	basic leucine-zipper 42 (.1)		Lus10029101 [exp]	13.4	0.5600
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10033482 [exp]	13.8	0.5878
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10002176 [exp]	23.0	0.6280
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10031582 [exp]	25.5	0.5632
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10024179 [exp]	28.0	0.5794
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Lus10040055 [exp]	34.8	0.5555
AT2G26850			F-box family protein (.1)		Lus10036444 [exp]	41.7	0.5330
AT5G14940			Major facilitator superfamily ...		Lus10005603 [exp]	51.1	0.5586

Compare expression of checked genes

Lus10033315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.