Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19185 520 / 0 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G45370 518 / 0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT3G45870 496 / 4e-176 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G75500 245 / 9e-78 WAT1 Walls Are Thin 1 (.1.2) AT3G18200 235 / 3e-74 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT3G53210 221 / 7e-69 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G30420 182 / 1e-53 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G01070 181 / 4e-53 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G11460 172 / 2e-50 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 172 / 5e-50 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034776 [exp] 763 / 0 AT4G19185 525 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10035693 [exp] 582 / 0 AT5G45370 502 / 1e-178 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10037284 [exp] 558 / 0 AT5G45370 475 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10035694 [exp] 528 / 0 AT4G19185 465 / 4e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10038959 [exp] 247 / 1e-78 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10027251 [exp] 245 / 1e-77 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10024301 [exp] 233 / 2e-72 AT1G75500 575 / 0.0 Walls Are Thin 1 (.1.2) Lus10010647 [exp] 193 / 8e-58 AT1G75500 492 / 6e-175 Walls Are Thin 1 (.1.2) Lus10007862 [exp] 185 / 1e-54 AT3G30340 371 / 1e-127 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G237100 [exp] 553 / 0 AT4G19185 476 / 4e-168 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 262 / 2e-84 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.015G042900 [exp] 240 / 4e-76 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.007G017800 [exp] 233 / 4e-73 AT1G75500 414 / 4e-144 Walls Are Thin 1 (.1.2) Potri.002G029100 [exp] 229 / 1e-71 AT1G75500 578 / 0.0 Walls Are Thin 1 (.1.2) Potri.015G073200 [exp] 196 / 4e-59 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.011G148400 [exp] 186 / 3e-55 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 182 / 3e-53 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 177 / 1e-51 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 175 / 8e-51 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10033316 pacid=23172042 polypeptide=Lus10033316 locus=Lus10033316.g ID=Lus10033316.BGIv1.0 annot-version=v1.0 ATGGCCGCTTCAGCCGTCGTCATCGGAGCTCTTGAGAAAGATGTCCGGAGAGCCCACATGTCGATGGCCCTCGTTCAGCTCATCAATGGAGGCTACCATG TTATCACCAAAGTAGCTCTCAATGTTGGGATCAATCAGCTCGTTTTCTGCCTCTTCCGCGACCTCCTTGCCCTCTCCATCCTCGCCCCCGTTGCCTATGT GCGGGAAAAGAGGATTCGACCGCCCATGACTAGGCGTTTGCTCATGGCTTTTTTCTTTCTTGGCTTATCAGGGATTTTTGGCAACCAGCTCTTGTTCCTT CTTGGTCTTAGCTACACGAATCCGACTTATGCTGCTGCAATACAGCCTTCCATTCCAGTTTTCACATTTGTCTTGGCTGTGATGACGGGTACAGAAAGAT TGAATTTGCTCAAAGCTGAAGGTCAAGCTAAGGTTTTAGGCACTGTAGTGTGTGTTTCTGGTGCCATATTCATGGTCCTTTTCCGCGGTCCTGCTGTCTT TGGACAGGCAGAAGCTGATTCTGGATCCAATGAAATAAGGGCTAGGGGTCAACCAGAGCCTGAAGGATGGTTTCTGTCCAGCCTTCTGGACCTTGGTCTA GAGACCTGGCATCTTGGGGTTTTATGCTTAATTGGAAATTGTATATGCATGGCAGCTTTTCTAGCCATTCAGGCTCCAGTTTTAGCAAAATATCCTGCCA ACATTTCAGTCACTGCATATTCCTATGGCTTTGGAACTGTATTAATGGTGCTGACAGCATTCTTCATGACGGATGAATCCACGGACTGGAGCTTAACTCG GTCAGAGTTCTTGGCTGTTATATATGCTGGAACTGTTGCATCTGCTCTTAATTATGGACTAATAACATGGTGCAACAAGATCTTAGGACCCGCCATGGTC GCCCTCTACAATCCACTTCAACCTGCAGCATCTGCCTTTCTCTCGAGAATCTTCCTGGGAAGCCCTATTTATCTCGGAAGCATAATAGGGGGATGCTTAA TCATAGCAGGGCTGTATTTAGTGACATGGGGATCATACAAAGAGAGAGAAGCAGCATCAGCATCAGAAAGTCTGGTTCTTCCGCATACGCCAGGCCGGCC ATCCGATCCTCTCATTCAAAAAGATGGGACCATAATCAAAGGTTTGTACCAGAGGGGAACCTCTTCTCCGGTTCATCGTTAA
AA sequence Show only first row Show all	>Lus10033316 pacid=23172042 polypeptide=Lus10033316 locus=Lus10033316.g ID=Lus10033316.BGIv1.0 annot-version=v1.0 MAASAVVIGALEKDVRRAHMSMALVQLINGGYHVITKVALNVGINQLVFCLFRDLLALSILAPVAYVREKRIRPPMTRRLLMAFFFLGLSGIFGNQLLFL LGLSYTNPTYAAAIQPSIPVFTFVLAVMTGTERLNLLKAEGQAKVLGTVVCVSGAIFMVLFRGPAVFGQAEADSGSNEIRARGQPEPEGWFLSSLLDLGL ETWHLGVLCLIGNCICMAAFLAIQAPVLAKYPANISVTAYSYGFGTVLMVLTAFFMTDESTDWSLTRSEFLAVIYAGTVASALNYGLITWCNKILGPAMV ALYNPLQPAASAFLSRIFLGSPIYLGSIIGGCLIIAGLYLVTWGSYKEREAASASESLVLPHTPGRPSDPLIQKDGTIIKGLYQRGTSSPVHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19185			nodulin MtN21 /EamA-like trans...		Lus10033316 [exp]	0	1
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10011238 [exp]	2.4	0.8690
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10037172 [exp]	5.8	0.8759
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Lus10017527 [exp]	6.3	0.8662
AT2G32800		AP4.3A	protein kinase family protein ...		Lus10007130 [exp]	12.0	0.7740
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Lus10018452 [exp]	14.7	0.8072
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10010203 [exp]	17.3	0.8678
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10026403 [exp]	18.0	0.8210
AT1G07710			Ankyrin repeat family protein ...		Lus10003748 [exp]	18.0	0.8272
AT3G02780		IDI2, IPIAT1, I...	ATISOPENTENYL DIPHOSPHE ISOMER...		Lus10026834 [exp]	19.2	0.8468
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10004891 [exp]	20.8	0.8561

Compare expression of checked genes

Lus10033316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.