Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19180 760 / 0 GDA1/CD39 nucleoside phosphatase family protein (.1) AT2G02970 159 / 3e-41 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14250 149 / 4e-38 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14240 144 / 1e-36 GDA1/CD39 nucleoside phosphatase family protein (.1.2.3.4) AT1G14230 138 / 1e-34 GDA1/CD39 nucleoside phosphatase family protein (.1) AT5G18280 75 / 1e-13 ATAPY2 apyrase 2 (.1.2) AT3G04080 73 / 3e-13 ATAPY1 apyrase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034777 [exp] 1258 / 0 AT4G19180 879 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10037285 [exp] 1078 / 0 AT4G19180 871 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10035695 [exp] 736 / 0 AT4G19180 660 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10027686 [exp] 266 / 1e-79 AT4G19180 296 / 8e-92 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10039953 [exp] 251 / 3e-75 AT4G19180 267 / 1e-81 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10012825 [exp] 145 / 2e-36 AT2G02970 605 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10030470 [exp] 144 / 4e-36 AT2G02970 613 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10006546 [exp] 84 / 1e-16 AT5G18280 647 / 0.0 apyrase 2 (.1.2) Lus10030471 [exp] 73 / 2e-13 AT2G02970 391 / 1e-133 GDA1/CD39 nucleoside phosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G236900 [exp] 929 / 0 AT4G19180 840 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.015G079900 [exp] 315 / 2e-98 AT4G19180 276 / 6e-84 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.008G086400 [exp] 135 / 3e-33 AT2G02970 635 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.010G169100 [exp] 133 / 1e-32 AT2G02970 606 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.009G157500 [exp] 110 / 5e-25 AT2G02970 330 / 9e-107 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.019G031200 [exp] 77 / 1e-14 AT3G04080 422 / 1e-144 apyrase 1 (.1) Potri.013G053500 [exp] 72 / 8e-13 AT5G18280 637 / 0.0 apyrase 2 (.1.2) Potri.019G031000 [exp] 68 / 1e-11 AT5G18280 617 / 0.0 apyrase 2 (.1.2) Potri.013G053700 [exp] 59 / 3e-09 AT5G18280 300 / 2e-98 apyrase 2 (.1.2) Potri.004G195600 [exp] 58 / 1e-08 AT5G21140 325 / 2e-108 embryo defective 1379 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF01150 [flax] [poplar] GDA1_CD39 GDA1/CD39 (nucleoside phosphatase) family
Representative CDS sequence Show only first row Show all	>Lus10033317 pacid=23172158 polypeptide=Lus10033317 locus=Lus10033317.g ID=Lus10033317.BGIv1.0 annot-version=v1.0 ATGGTATTTGGTAGAATAGCGTCTGCGGTTTCTGCTGCGGCCACTCGCCTCTCGTTTTCGGGATCAAATTCTGCTTCCATCTCATATATGTCAACTGGGG TATCACCACCTCCTACAGAACCCGTGGATAATCGGTTTTCTATCTCAAACCCTGCACAGAACAAGGCCAGTTTGAGGCTCTCTTCGTCACTGCAAGACTT GTCATCGTACAGGAGACTTGATCCAGAGGAAGCTGAACCTCTCAAATTTGGGGTTGATAAGAACATTCGTTTGCTACAGAGAGAGAATGTTAATGCAAGC TTCTCAAAGGAGAAAGGACTGCCAGCTGCGGCCCCTTACTCGTTAAGGAAATGGGTCCGGTCGTTGATGGTCTTACTGTGCCTGTTGTTGTTTAGTTTGT TAGGTTATATGATTGCTATTTACATTTATTCTTATTGGTCTCAAGGATCGTCCAAGTTCTATGTTGTTCTTGATTGTGGAAGTACTGGAACTCGCGTGTT TGTATACCGGGCAGCTGTTGATAATAAGAAAGAGGGTAACTTGCCCATTGTGGTGAAATCATTTGCTGAAAGTGTTTCTCGAAAGCCGACTGGGCGTGCT TATGACCGAATGGAGACTGAACCGGGGCTTCATATGTTAGTGCATAATACATCTGGCTTGAAGTCTGCTCTAAATCCGCTTCTTAAATGGGCTCGAAAGC AAATTCCGAAGGATGCACATCAGTCAACCTCACTTTTCCTTTACGCTACTGCTGGAGTACGCAGGCTTCCTAAATCAGATTCAAAATGGCTGCTGGATAA GTCATGGTCTATACTAAAGGAATCTCCGTTCTTGTGTCAAAGAGAATGGATTAAGATTATCAGTGGTATGGAAGAAGCATACTTTGGATGGATAGCCTTG AATTATAGGACAGAGGTACTGGGAGCTAGTCCCAAGAAGCCAACATTCGGTGCTCTTGACCTAGGGGGTTCATCATTGCAGGTCACATTTGAGGGTAATA AACAGTTCCGTAACCAGACAAACTTAAAGCTTAGGATTGGAGCTGTTAATCATCGTCTCAGTGCCTATTCTCTTTCAGGATATGGTTTAAATGATGCATT TGACAAGTCTGTTGTTCATATCCTAAAGAGGCTTCCAAATGCTGATCTATATAGTAGGAAAGTAGAGATTAAGCACCCTTGTCTTCATTCTGGCTACAAG GAGGATTATCAATGTCCTCTCTGCAGTTCTTACAAGCAGGAAGGCGCCAGTCCTGTCATCAGAGGGAGAGAACTTCACAAGGCAACTAAATCAGGAGTGG CTGTTCAGCTTATTGGTTCTCCAAATTGGGACGAATGCAGCGCTCTTGCTAAAATAGTTGTTAATTTGTCTGAATGGTCAGATAAAAGCCCAGTACTAGA CTGTGACCTGCAACCCTGTGCACTACCTGAAGGTCTGCCTCGTCCTTCAGGCCAGTTCTACGCGATGTCTGGGTTTTTTGTGGTGTATCGGTTTTTTAAC CTTTCTGCAGAAGCTTCCCTTGATGATGTATTGGAGAAAGGTAGAGAATTCTGTGAAAGGAATTGGAAAGCTGCAAAAGGCAGTGTTCCTCCACAGCCCT TTATTGAACAATACTGCTTTCGCGCACCTTATGTAGTGTCATTGTTCAGAGAGGGTTTGCACATCACAGATAACCAGATTGTTATTGGTTCCGGTAGTAT GACTTGGACACTTGGGGTTGCACTACTGGAAGCTGGGAAAACATTTTCAACCAGATTAAGGCTTCATAAATATGAAATATTCCATTTGAAGATACATCCA ACAGTTCTCATTGCAATTTTGCTCTTGTCATTGGTCATACTGCTTTTTGCATTATCATCTGCTGGCACCTGGATTCCAAGGTTTTTGCGGAGACCATATC TTCCGCTGTTCAGGCATAATAGTGCAACTGCCACGTCTGTTCTCAACATCCCTTATCCCTTCCGTTTTCAACGTTGGAGTCCCATCAATACTGATATGAC CAGCTCTGAACTTGTAATGACAGGAGATGGAAGAGTAAAGATGCCATTGAGTCCAACAGTGGGAGGTGGACAACAAAGACCATTTGGAATGGGAAATGGT GTGGGTGGAAATGGGATCGAGCTGATGGAGGCTGCAGCATTCAGCAGTGTTTCACATAGTTATTCATCAAACAGTTTAGGGCAGATGGTTGAGAGTAGTG GTAGCATGGTCTCCTTCTGGTCCCCTCACAGAAGTCAGATGCGTCTTCAGAGCCGGAGATCACAATCCAGAGAAGACCTCACTTCGTCCTTGGCAGATAC TCATCTGGTGAAGGTTTAG
AA sequence Show only first row Show all	>Lus10033317 pacid=23172158 polypeptide=Lus10033317 locus=Lus10033317.g ID=Lus10033317.BGIv1.0 annot-version=v1.0 MVFGRIASAVSAAATRLSFSGSNSASISYMSTGVSPPPTEPVDNRFSISNPAQNKASLRLSSSLQDLSSYRRLDPEEAEPLKFGVDKNIRLLQRENVNAS FSKEKGLPAAAPYSLRKWVRSLMVLLCLLLFSLLGYMIAIYIYSYWSQGSSKFYVVLDCGSTGTRVFVYRAAVDNKKEGNLPIVVKSFAESVSRKPTGRA YDRMETEPGLHMLVHNTSGLKSALNPLLKWARKQIPKDAHQSTSLFLYATAGVRRLPKSDSKWLLDKSWSILKESPFLCQREWIKIISGMEEAYFGWIAL NYRTEVLGASPKKPTFGALDLGGSSLQVTFEGNKQFRNQTNLKLRIGAVNHRLSAYSLSGYGLNDAFDKSVVHILKRLPNADLYSRKVEIKHPCLHSGYK EDYQCPLCSSYKQEGASPVIRGRELHKATKSGVAVQLIGSPNWDECSALAKIVVNLSEWSDKSPVLDCDLQPCALPEGLPRPSGQFYAMSGFFVVYRFFN LSAEASLDDVLEKGREFCERNWKAAKGSVPPQPFIEQYCFRAPYVVSLFREGLHITDNQIVIGSGSMTWTLGVALLEAGKTFSTRLRLHKYEIFHLKIHP TVLIAILLLSLVILLFALSSAGTWIPRFLRRPYLPLFRHNSATATSVLNIPYPFRFQRWSPINTDMTSSELVMTGDGRVKMPLSPTVGGGQQRPFGMGNG VGGNGIELMEAAAFSSVSHSYSSNSLGQMVESSGSMVSFWSPHRSQMRLQSRRSQSREDLTSSLADTHLVKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10033317 [exp]	0	1
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10007999 [exp]	3.7	0.8292
AT1G11660			heat shock protein 70 (Hsp 70)...		Lus10019627 [exp]	10.4	0.7865
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Lus10018744 [exp]	17.9	0.8176
AT1G73430			sec34-like family protein (.1....		Lus10001792 [exp]	19.3	0.8039
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Lus10024828 [exp]	21.7	0.8229
AT3G11910		AtUBP13, UBP13	ubiquitin-specific protease 13...		Lus10034130 [exp]	29.9	0.8094
AT2G48060			unknown protein		Lus10008175 [exp]	30.0	0.8108
AT2G46560			transducin family protein / WD...		Lus10030236 [exp]	32.2	0.8180
AT1G55750			BSD domain (BTF2-like transcri...		Lus10007089 [exp]	34.5	0.7866
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10022850 [exp]	35.7	0.8155

Compare expression of checked genes

Lus10033317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.