Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06040 489 / 4e-163 unknown protein AT5G21900 245 / 2e-72 RNI-like superfamily protein (.1) AT1G21410 86 / 9e-18 SKP2A F-box/RNI-like superfamily protein (.1) AT5G23340 76 / 2e-14 RNI-like superfamily protein (.1) AT1G77000 75 / 3e-14 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT3G58530 66 / 2e-11 RNI-like superfamily protein (.1) AT2G25490 66 / 6e-11 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G25350 65 / 1e-10 EBF2 EIN3-binding F box protein 2 (.1) AT4G15475 60 / 6e-09 F-box/RNI-like superfamily protein (.1) AT3G07550 55 / 1e-07 RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034779 [exp] 1219 / 0 AT2G06040 471 / 5e-156 unknown protein Lus10017169 [exp] 727 / 0 AT2G06040 436 / 4e-143 unknown protein Lus10021558 [exp] 151 / 3e-39 AT2G06005 428 / 3e-149 FRIGIDA interacting protein 1 (.1.2) Lus10012764 [exp] 79 / 1e-14 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10040998 [exp] 76 / 4e-14 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 73 / 3e-13 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10018942 [exp] 71 / 8e-13 AT1G21410 513 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10028645 [exp] 71 / 9e-13 AT1G21410 520 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10002913 [exp] 68 / 1e-11 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G142200 [exp] 595 / 0 AT2G06040 544 / 0.0 unknown protein Potri.006G220600 [exp] 405 / 1e-131 AT2G06040 427 / 1e-139 unknown protein Potri.002G074700 [exp] 74 / 6e-14 AT1G21410 518 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.006G254100 [exp] 74 / 2e-13 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.005G185700 [exp] 71 / 1e-12 AT1G77000 523 / 0.0 ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) Potri.005G088800 [exp] 70 / 2e-12 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.018G027700 [exp] 71 / 3e-12 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G195800 [exp] 65 / 8e-11 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 63 / 6e-10 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G068500 [exp] 61 / 4e-09 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033320 pacid=23172240 polypeptide=Lus10033320 locus=Lus10033320.g ID=Lus10033320.BGIv1.0 annot-version=v1.0 ATGGTTCTGCTTCGTTCTCGAGAAGTCACTCCAAAATCCCTAGCGAAAGACTCCGACACTACCTCCAATGACCGTGAACCCTCCGACGGTCAAACTTCTC CACCTGCCTCTCTTCCGTCTCAAACTCCTCCACCTGTCTCTATTCCCACCACCACGCCCAGAAGGAGCTCCCGTCTCGCTTCCAGATCGCCGCCTGCAGA TGAAGCGCCTCAGACTTCCGGCCGCAAGAGGAAGACTACCGAAATTAAAGCTGAAAAGGAGGAGTCTCCCTCGTTGGAGGGCACCAGTTGTAACCAAGGT CTCGTGATTGCTGATACGACGACTAAACAGGAGGATGAGGGGGAAAGTGGTGGGAAAGACGACGCTATTCCCCGTAGTGATAAGCGCACTAGAAGATTTA GTAGTGAAGAAAAAGGGAAGGGGAAAATTGGGGAAGCGGGGGTTTCAGATCACAATCCTTTGAGAAACGGGGCTATGCGGCCTCCAGGAAGCCTGATAAT TGACGATGGCAAGGCAGGTGGTGAAGGAGGACGACGAAACCCTGATCAGGAGAGACTGACGCTGGAAGAAGGTAATGAACTGGAATCTAAAGTCAAGTTC TTTGTTGACTCAATTAGAACCCAATTTCCGGCGGAAAATGTTAAACGGCCTACGGATGGTGGTTTGACGAATAAGATATCTGGTTCACGAATGCACCAGT TCAAGGAAGCCGCCCGCAAGAATGCGGCTCGATTTGCTCATGTTGTGGCTGAAGAAGAGCATCTGCAAGATGAGGCCACTCCTGGCGTTGAAATTGATGA CCCATCTACTGAGGAAGAAGACAAGGTTGAAGATTGGCCAGGTCCTTTCTCGACTGCCATGAAAATTATTCGGGATAGATCAAATAGGATCAACTTGCAA AGCTGGAAGCCCACTTCTGACAAGTCAAAGTCCGTTGGAATAAATTGGACTCCCAGAGAAAATGGTGGCGGTAATTGCTCGAAACCATTGGTGCCGCCTT CGTTGCAACAACTCTGCATTGAAGGTCTTGCCAAAAATGCCGATGCAATCACTTCACTCGAACATGTTCCTGATGTTTACAAGCATAGGCTTTCCCAGTT GCTCTGCGATTCTCGAAAGATGAATACTAGATTTCTCCAGCTTCTCGTTAGTGGATCTCCTTCTGAAATACGAATCAGGGATTGCTCCTGGTTGACGGAG GAAGACTTCAAAGATTGTATTGAGGGGCTTGACACCAGCAATTTAGAGGTTCTCCAACTCGACTTTTGTGGAAGAAGCTTGCCTGATTATGTTTTTATGT ATAGCTTAGCTCGATCTCTAAGCAGCTTGCCTGCACTAAATACTGTATCTCTGAGTGGTGCTTATCGGCTTTCAGATGTTGGACTTAGATCAATTGTCTC TGCTGCTTCTACACTACAATGCCTTAATCTTAGCCAGTGTTCTCTAATTGCTGCAACTAGTATCAGCATTTTGGCAGACTCGGTGGGATCTACTTTGAAA GAACTATATATTAATGACTGCCAAAATATTGTCGCTATGGATATGTTACCTTCTTTGATGAGGCTTCAACAGCTGGAAGTTCTGTCATTGGGTGGTATTG AAACCGTTAGTGATGACTTCATTATGGCTTATTGTGCTGAACGTGGAGATGCTATGAAGGAGCTTATTCTTTCTGACTGCGTGAAATTGACTGATACTTC CTTGAAAGCCATAGCTACTGCATGTCCTCGACTGCAGTCTCTCAACCTTGCAAATTTGCGGAAGTTGACTGACTCGGCATTAGGATATCTTGCAAACGGC TGCCGTAATATTCAAACCTTAAAACTCTGTCTCAACAATTTCAGTGATGAAGCAATTGCAGCATTCATAGAAACTTCCGGGGAGACATTGAAAGATCTTT CACTTAATAATGTCAAACAGGTTAGTCACCACACTGCAGTGGCTGTAGCTAGACGTGCAAGAGATTTGCAGAGTTTGGATATTTCATGGTGCCGGAACTT GGAGGACGAGGCGGTTGGTATGATTGTGGATAGCTGTTTGTCATTGAAGGTGCTCAAAATTTTTGGGTGTGATCAGCTGACAGATGTGCTCATAGGCGGT CACTCGAATCCAGTAGTGGAAATCATTGGGAAGAAGATGAGCCCAGCTTTAACAAATGTCCGAAAGGGTGATGTTGGACCATCATTCCCAGCGCACTATA CATCAGTGCTATCCTCCATGTAA
AA sequence Show only first row Show all	>Lus10033320 pacid=23172240 polypeptide=Lus10033320 locus=Lus10033320.g ID=Lus10033320.BGIv1.0 annot-version=v1.0 MVLLRSREVTPKSLAKDSDTTSNDREPSDGQTSPPASLPSQTPPPVSIPTTTPRRSSRLASRSPPADEAPQTSGRKRKTTEIKAEKEESPSLEGTSCNQG LVIADTTTKQEDEGESGGKDDAIPRSDKRTRRFSSEEKGKGKIGEAGVSDHNPLRNGAMRPPGSLIIDDGKAGGEGGRRNPDQERLTLEEGNELESKVKF FVDSIRTQFPAENVKRPTDGGLTNKISGSRMHQFKEAARKNAARFAHVVAEEEHLQDEATPGVEIDDPSTEEEDKVEDWPGPFSTAMKIIRDRSNRINLQ SWKPTSDKSKSVGINWTPRENGGGNCSKPLVPPSLQQLCIEGLAKNADAITSLEHVPDVYKHRLSQLLCDSRKMNTRFLQLLVSGSPSEIRIRDCSWLTE EDFKDCIEGLDTSNLEVLQLDFCGRSLPDYVFMYSLARSLSSLPALNTVSLSGAYRLSDVGLRSIVSAASTLQCLNLSQCSLIAATSISILADSVGSTLK ELYINDCQNIVAMDMLPSLMRLQQLEVLSLGGIETVSDDFIMAYCAERGDAMKELILSDCVKLTDTSLKAIATACPRLQSLNLANLRKLTDSALGYLANG CRNIQTLKLCLNNFSDEAIAAFIETSGETLKDLSLNNVKQVSHHTAVAVARRARDLQSLDISWCRNLEDEAVGMIVDSCLSLKVLKIFGCDQLTDVLIGG HSNPVVEIIGKKMSPALTNVRKGDVGPSFPAHYTSVLSSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G06040			unknown protein		Lus10033320 [exp]	0	1
AT1G67690			Zincin-like metalloproteases f...		Lus10037058 [exp]	5.5	0.7968
AT5G14610			DEAD box RNA helicase family p...		Lus10032133 [exp]	10.0	0.8103
AT1G67690			Zincin-like metalloproteases f...		Lus10036925 [exp]	12.0	0.7770
AT1G11060			WAPL (Wings apart-like protein...		Lus10005857 [exp]	18.7	0.7758
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10003795 [exp]	19.8	0.7714
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10017026 [exp]	20.8	0.7700
					Lus10023787 [exp]	22.1	0.7227
AT2G06040			unknown protein		Lus10034779 [exp]	24.1	0.6893
AT4G22360			SWIB complex BAF60b domain-con...		Lus10016581 [exp]	32.6	0.7539
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10021351 [exp]	37.6	0.7568

Compare expression of checked genes

Lus10033320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.