Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16720 826 / 0 HCF173 high chlorophyll fluorescence phenotype 173 (.1) AT4G18810 105 / 1e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G31530 59 / 4e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G33360 56 / 3e-08 FLDH farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT5G02240 54 / 7e-08 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G37660 55 / 8e-08 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G18660 45 / 8e-05 PCB2, DVR PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G72640 44 / 0.0002 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G35250 44 / 0.0003 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G58490 43 / 0.0004 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034781 [exp] 1067 / 0 AT1G16720 870 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Lus10029255 [exp] 113 / 3e-26 AT4G18810 851 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10007308 [exp] 110 / 3e-25 AT4G18810 850 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10022420 [exp] 57 / 2e-08 AT4G31530 415 / 4e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10024383 [exp] 55 / 7e-08 AT2G37660 458 / 1e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010846 [exp] 55 / 1e-07 AT2G37660 451 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041863 [exp] 54 / 1e-07 AT4G33360 416 / 3e-146 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10009715 [exp] 54 / 1e-07 AT4G31530 408 / 1e-144 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10020372 [exp] 47 / 3e-05 AT2G23910 226 / 6e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G000400 [exp] 870 / 0 AT1G16720 863 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Potri.007G003500 [exp] 854 / 0 AT1G16720 852 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Potri.004G061200 [exp] 109 / 6e-25 AT4G18810 812 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G086800 [exp] 56 / 5e-08 AT2G37660 450 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G127400 [exp] 50 / 2e-06 AT4G33360 494 / 4e-177 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G253900 [exp] 50 / 2e-06 AT4G31530 399 / 1e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.003G063800 [exp] 48 / 9e-06 AT1G72640 348 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G127500 [exp] 48 / 1e-05 AT4G33360 531 / 0.0 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.009G143000 [exp] 46 / 4e-05 AT4G35250 642 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G138400 [exp] 46 / 5e-05 AT5G42800 202 / 9e-62 dihydroflavonol 4-reductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family CL0202 [flax] [poplar] GBD PF08547 [flax] [poplar] CIA30 Complex I intermediate-associated protein 30 (CIA30)
Representative CDS sequence Show only first row Show all	>Lus10033322 pacid=23172233 polypeptide=Lus10033322 locus=Lus10033322.g ID=Lus10033322.BGIv1.0 annot-version=v1.0 ATGATGAAAGCCACTGCAATTCTTCCAACTACCCCCACTCTCAGAGTCGGAAATGCCAATGCCTTCATCAACTATTTCGCTCCTCACCCCCGACCATTTA CTTTTCCTGCCGCCGTCGTCAAGAAGTCCACTCCTCTCACCATCGTCGCCATCTCTTCCTCCGACGACAGTAAAACCACCAGCAACAACAAGAAGAATAA GAAGAGCTCTAAAGGCGACGACGACCAATCATTGCCCCCTACCACCATCACCGCCGCCTCCAGCGATCCGTCGAAGGAGTCGCAGCCTATCAACCTGGAT GACGTCAATCCGGTGGGGCTAGGCCGTAGGTCGCGGCAGATATTCGACGAGGTGTGGCGGAAGTTCTCCGGACTAGGGCAGATTTCCCGGACCACCCGAC CCGACGAGACCGCTGCAGCTTTGGACGCTCTGCTCATTAGAGAAGGTCCGATGTGCGAGTTCGCTGTTCCAGGTGCGCAGAACACCACCGTCCTCGTCGT CGGGCCTACTAGCAGAATTGGCCGCATTCTTGTCAGAAAACTCATGCTCCGTGGCTACTCCGTCAAGGCTTTGTTAAGGAAGGTAGACGAAGAAGTGGTG GAAATGCTGCCAAGGTCAGTGGAAATAGTGACAGGGGATGTAGGTGATTTTTCTACAATTCAGGAAGCAGTACAAGGCTGCAACAAGATCATCTACTGTG CAACAGCTCGTTCCACCATTACTGCTGATCTCTTCCGGGTTGATCAGCAAGGAGTTTATAATCTCACCAAAGCCTTTCAGGATTACAATCACAGGCAAGC ACAACTGCGGGCTGGGAAAAGCAGCAAAAGCAAGCTTCTGCTGGCAAAGTTCAAGTCCGCCGAGTCATTGAATGGTTGGGAAGTTCAGTTGGGAACTTAC TTCAAGGATGCTGCTGCTTCCAAGTATGACGGTGGATTAGATGCATCATTTGAGTACAATGAGAATGGAGAGGCAGTTTTCTCAGGGTATGTTTACACCA GAGGAGGGTATGTTGATTTGTCGAGAAAGCTTTCGCTTCCCTTAGGGTACACGCTCGACAGGTATGAAGGGCTTGTGCTATCTGTTGGTGGTAATGGAAG GTCATATGTTCTTATTCTTGAAGCCGGTCCTTCAGCTGATAGAACCCAAAGCAAATTATACTTTGCAAGATTCAACACAAAAGCAGGGTTCTGTAGGGTT AGAGTCCCATTTTCGTCTTTCCGTTCTGTGAAACCAGATGATCCTCCACTAGATCCATTCCTTGTACACACAATGACCATTCGATTTGAGCCCCGAAGAC AGAGATCTATTGAAGCTCCTTCAGGACCTCAGCAAGATCCGAGGAGCTTTAAATTGATATTCGAATACATAAAAGCTCTGCCGACTGGACAAGAGACGGA TTTTGTATTAGTGTCATGTACAGGGCAAGGAGTAGAACCTACCAGGAGGGAACAAGTCCTGAAGGCGAAAAGGGCTGGTGAGGATTTATTAAGGAATTCA GGACTTGGATACACAATCATTCGTCCTGGACCTCTTAAGGAAGAGCCTGGTGGGCAACGTGCACTGGTTTTTGATCAAGGTAACAGGATTTCTCAGGGCA TAAGCTGTGCCGATGTGGCTGATATATGCGTGAAGGCCTTGCATGATTCAACTGCTAGAAACAAAAGCTTTGACGTCTGTTACGAGTACGTGGCTGAGCA AGGACAAGAGCTTTACGAGCTGGTGGCACATCTACCGGACAAAGCGAACAACTACCTTACTCCTGCACTCTCTGTGCTTGAGAAGAACACATGA
AA sequence Show only first row Show all	>Lus10033322 pacid=23172233 polypeptide=Lus10033322 locus=Lus10033322.g ID=Lus10033322.BGIv1.0 annot-version=v1.0 MMKATAILPTTPTLRVGNANAFINYFAPHPRPFTFPAAVVKKSTPLTIVAISSSDDSKTTSNNKKNKKSSKGDDDQSLPPTTITAASSDPSKESQPINLD DVNPVGLGRRSRQIFDEVWRKFSGLGQISRTTRPDETAAALDALLIREGPMCEFAVPGAQNTTVLVVGPTSRIGRILVRKLMLRGYSVKALLRKVDEEVV EMLPRSVEIVTGDVGDFSTIQEAVQGCNKIIYCATARSTITADLFRVDQQGVYNLTKAFQDYNHRQAQLRAGKSSKSKLLLAKFKSAESLNGWEVQLGTY FKDAAASKYDGGLDASFEYNENGEAVFSGYVYTRGGYVDLSRKLSLPLGYTLDRYEGLVLSVGGNGRSYVLILEAGPSADRTQSKLYFARFNTKAGFCRV RVPFSSFRSVKPDDPPLDPFLVHTMTIRFEPRRQRSIEAPSGPQQDPRSFKLIFEYIKALPTGQETDFVLVSCTGQGVEPTRREQVLKAKRAGEDLLRNS GLGYTIIRPGPLKEEPGGQRALVFDQGNRISQGISCADVADICVKALHDSTARNKSFDVCYEYVAEQGQELYELVAHLPDKANNYLTPALSVLEKNT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16720		HCF173	high chlorophyll fluorescence ...		Lus10033322 [exp]	0	1
AT1G16720		HCF173	high chlorophyll fluorescence ...		Lus10034781 [exp]	1.0	0.9672
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10006620 [exp]	1.4	0.9260
AT3G56140			Protein of unknown function (D...		Lus10010224 [exp]	2.8	0.9114
AT2G32950		FUS1, EMB168, D...	FUSCA 1, EMBRYO DEFECTIVE 168,...		Lus10035332 [exp]	3.2	0.9071
AT2G32950		FUS1, EMB168, D...	FUSCA 1, EMBRYO DEFECTIVE 168,...		Lus10029990 [exp]	4.7	0.8839
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Lus10005798 [exp]	5.2	0.9159
AT5G24850		CRY3	cryptochrome 3 (.1)		Lus10020878 [exp]	5.7	0.8924
AT4G22120			ERD (early-responsive to dehyd...		Lus10002996 [exp]	7.9	0.8659
AT5G24850		CRY3	cryptochrome 3 (.1)		Lus10033499 [exp]	10.0	0.8895
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10016003 [exp]	11.0	0.8535

Compare expression of checked genes

Lus10033322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.