Plant FIBer expression Database

Lus10033323 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78995 144 / 6e-44 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034782
[exp]
226 / 2e-76 AT1G78995 147 / 7e-46 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G003600
[exp]
135 / 2e-40 AT1G78995 146 / 4e-45 unknown protein
PFAM info
Representative CDS sequence
>Lus10033323 pacid=23172087 polypeptide=Lus10033323 locus=Lus10033323.g ID=Lus10033323.BGIv1.0 annot-version=v1.0
ATGATATTACAGAATCACCATTACAATATCCCCGAGATCATTACAAAAAAGCTCAGACCAACACCTAATTCCTCCTCCTCCTCTGCCGCCATAGCCACCG
CAATCAATTGCCCAAGTAGAACTGCAATTAGCCGACGACGCCTGGCAGTAAGCGTTGCAATAAGCCAGCTGGTAGCTGCCTGTGCGGTGCTATTCATGTC
CCCGTCAGCGCCGGCGGCCGGCGCAATAGAGAAGTCCTCGAAGGGAAAGAAAGGCAAGAGAGCGGCGGAAGGAGGCGAGGAGGAGGAGGAGGAGGAGGAG
ACGCTTGGGAATGTGCCGCAAACACTGGCGGGAGAATGCGGCGAGGAAGAAGGGAAAGATTGTAACAAGAAGAAGATGAGGATACAGAGACCTAAATCCA
GAAAAGCTGAGGTTTGCACTGTCAAATGCGTCAACACCTGCATCCGCGGCGATGAAGGCGAAGGCCCTTTCAATATCAGGAGACCTCTGGTGGTGTTCAA
GCAAGGATTCCGTAGCCGCCACTACTGCTTAGTAGAGTGCTCTGACATCTGTAATCTCATCGGAGATGGAGATGATGGCCCCTGA
AA sequence
>Lus10033323 pacid=23172087 polypeptide=Lus10033323 locus=Lus10033323.g ID=Lus10033323.BGIv1.0 annot-version=v1.0
MILQNHHYNIPEIITKKLRPTPNSSSSSAAIATAINCPSRTAISRRRLAVSVAISQLVAACAVLFMSPSAPAAGAIEKSSKGKKGKRAAEGGEEEEEEEE
TLGNVPQTLAGECGEEEGKDCNKKKMRIQRPKSRKAEVCTVKCVNTCIRGDEGEGPFNIRRPLVVFKQGFRSRHYCLVECSDICNLIGDGDDGP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G78995 unknown protein Lus10033323
[exp]
0 1
AT4G37930 SHMT1, STM, SHM... SERINE HYDROXYMETHYLTRANSFERAS... Lus10039629
[exp]
2.2 0.9703
AT3G25690 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLA... Lus10034382
[exp]
3.2 0.9570
AT3G05410 Photosystem II reaction center... Lus10004498
[exp]
4.5 0.9503
AT4G03280 PGR1, PETC PROTON GRADIENT REGULATION 1, ... Lus10039739
[exp]
4.9 0.9625
AT4G37930 SHMT1, STM, SHM... SERINE HYDROXYMETHYLTRANSFERAS... Lus10029559
[exp]
6.0 0.9580
AT4G03280 PGR1, PETC PROTON GRADIENT REGULATION 1, ... Lus10018521
[exp]
6.7 0.9589
AT2G28800 ABL3, ALB3 ALBINO 3, 63 kDa inner membran... Lus10016570
[exp]
7.3 0.9511
AT5G36700 ATPGLP1, 2-PHOS... 2-phosphoglycolate phosphatase... Lus10026241
[exp]
8.8 0.9563
AT3G63140 CSP41A chloroplast stem-loop binding ... Lus10006931
[exp]
8.8 0.9548
AT5G66190 ATLFNR1 ferredoxin-NADP\(+\)-oxidoredu... Lus10041904
[exp]
8.9 0.9517

Lus10033323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.