Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57170 118 / 3e-35 Tautomerase/MIF superfamily protein (.1.2) AT5G01650 97 / 6e-27 Tautomerase/MIF superfamily protein (.1.2) AT3G51660 58 / 8e-12 Tautomerase/MIF superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034783 [exp] 132 / 5e-40 AT5G57170 116 / 4e-34 Tautomerase/MIF superfamily protein (.1.2) Lus10022681 [exp] 85 / 6e-22 AT5G01650 172 / 8e-57 Tautomerase/MIF superfamily protein (.1.2) Lus10014233 [exp] 82 / 1e-20 AT5G01650 169 / 1e-55 Tautomerase/MIF superfamily protein (.1.2) Lus10012223 [exp] 69 / 8e-16 AT5G01650 146 / 9e-47 Tautomerase/MIF superfamily protein (.1.2) Lus10012222 [exp] 63 / 1e-13 AT3G51660 158 / 1e-51 Tautomerase/MIF superfamily protein (.1) Lus10000344 [exp] 61 / 5e-13 AT3G51660 96 / 2e-27 Tautomerase/MIF superfamily protein (.1) Lus10000345 [exp] 47 / 7e-07 AT5G01650 52 / 2e-11 Tautomerase/MIF superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G075100 [exp] 108 / 2e-31 AT5G57170 194 / 7e-66 Tautomerase/MIF superfamily protein (.1.2) Potri.016G126500 [exp] 96 / 1e-26 AT5G01650 193 / 2e-65 Tautomerase/MIF superfamily protein (.1.2) Potri.016G126600 [exp] 96 / 2e-26 AT5G01650 216 / 2e-74 Tautomerase/MIF superfamily protein (.1.2) Potri.006G104500 [exp] 93 / 2e-25 AT5G01650 200 / 5e-68 Tautomerase/MIF superfamily protein (.1.2) Potri.016G126800 [exp] 90 / 4e-24 AT5G01650 185 / 4e-62 Tautomerase/MIF superfamily protein (.1.2) Potri.006G104600 [exp] 89 / 2e-23 AT5G01650 180 / 3e-60 Tautomerase/MIF superfamily protein (.1.2) Potri.016G126700 [exp] 88 / 2e-23 AT5G01650 164 / 6e-54 Tautomerase/MIF superfamily protein (.1.2) Potri.006G104800 [exp] 63 / 2e-13 AT3G51660 151 / 7e-49 Tautomerase/MIF superfamily protein (.1) Potri.016G127300 [exp] 62 / 5e-13 AT3G51660 151 / 7e-49 Tautomerase/MIF superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0082 [flax] [poplar] MIF PF01187 [flax] [poplar] MIF Macrophage migration inhibitory factor (MIF)
Representative CDS sequence Show only first row Show all	>Lus10033324 pacid=23172121 polypeptide=Lus10033324 locus=Lus10033324.g ID=Lus10033324.BGIv1.0 annot-version=v1.0 ATGGGAGGGGAAGAGTCCAGTTTCAGACCACCCATTTTCGGGGGAGCAAGCTCTTATCCAGCCAGCACCAGTGGCGAAGAAGGAAGAAGAAGCAGCAGCA GGGCGGCGGTGGAAAATGCCGACCTTGAATCTTATGTGATGATTGTGGTGAACAGCGGGGTACCTATGGCGTTTGGTGGTACGGAGGAGCCTGCTGCATT TGGAGAATTGATTTCGATAGGGGGACTGGGGCCAACTGTCAACGGGAAGCTTAGTTCTACCATTGCAGAGATTCTTCAAACAAAGGCCTCCATCGATAGC TCCCGATTTTACATCAAATTTTACGATGTTGAGGTTGCGATCAACCATAAGCAGCAGCGGCGGGAACAGGGAGAACTGTATTCTCCATCAGCCGCCATGA ACTACCGTCGTCCGTCAGCAGCAGACTAG
AA sequence Show only first row Show all	>Lus10033324 pacid=23172121 polypeptide=Lus10033324 locus=Lus10033324.g ID=Lus10033324.BGIv1.0 annot-version=v1.0 MGGEESSFRPPIFGGASSYPASTSGEEGRRSSSRAAVENADLESYVMIVVNSGVPMAFGGTEEPAAFGELISIGGLGPTVNGKLSSTIAEILQTKASIDS SRFYIKFYDVEVAINHKQQRREQGELYSPSAAMNYRRPSAAD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57170			Tautomerase/MIF superfamily pr...		Lus10033324 [exp]	0	1
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10036471 [exp]	7.2	0.8778
AT3G47860		CHL	chloroplastic lipocalin (.1)		Lus10037318 [exp]	7.7	0.8624
AT1G32470			Single hybrid motif superfamil...		Lus10035374 [exp]	11.7	0.8796
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10038305 [exp]	12.0	0.8651
AT5G51010			Rubredoxin-like superfamily pr...		Lus10027889 [exp]	14.4	0.8234
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10000063 [exp]	15.3	0.8711
AT5G64350		FKP12, ATFKBP12...	ARABIDOPSIS THALIANA FK506-BIN...		Lus10016586 [exp]	16.2	0.8241
AT4G11880	MADS	AGL14	AGAMOUS-like 14 (.1)		Lus10014144 [exp]	19.4	0.8539
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Lus10001966 [exp]	21.6	0.8738
AT1G32470			Single hybrid motif superfamil...		Lus10030979 [exp]	22.8	0.8774

Compare expression of checked genes

Lus10033324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.