Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68760 201 / 1e-67 ATNUDX1, ATNUDT1 NUDIX HYDROLASE 1, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 1, nudix hydrolase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034784 [exp] 281 / 4e-99 AT1G68760 198 / 2e-66 NUDIX HYDROLASE 1, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 1, nudix hydrolase 1 (.1) Lus10038780 [exp] 45 / 5e-06 AT5G47650 345 / 1e-118 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10039079 [exp] 44 / 1e-05 AT5G47650 345 / 3e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G114300 [exp] 224 / 1e-76 AT1G68760 196 / 1e-65 NUDIX HYDROLASE 1, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 1, nudix hydrolase 1 (.1) Potri.008G114400 [exp] 172 / 5e-55 AT1G68760 177 / 1e-56 NUDIX HYDROLASE 1, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 1, nudix hydrolase 1 (.1) Potri.001G368000 [exp] 42 / 3e-05 AT5G47650 342 / 6e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.016G006000 [exp] 42 / 3e-05 AT5G47650 352 / 3e-122 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.014G168400 [exp] 41 / 9e-05 AT5G47650 331 / 2e-113 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.005G077500 [exp] 40 / 0.0002 AT5G47650 322 / 2e-110 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10033325 pacid=23172067 polypeptide=Lus10033325 locus=Lus10033325.g ID=Lus10033325.BGIv1.0 annot-version=v1.0 ATGGAGCCGCCGACGCCGTCTCCCAAAGTTGCCGTTGTACTGTTCCTGCTTAAAGGCAAGTCATCTGTTCTGCTGGGACGTCGCCGATCGTCAATCGGAG ATTCCACCTTTGCTCTCCCCGGCGGAAACCTCGAATTTGGAGAAAGCTTTGAAGAGTGCGCGATAAGAGAACTGAAGGAAGAGACGGGCCTGATGGTTCA CGAGACAGAGTTCCTAACGGTGACGAACAACGTGTTTGTAGAATCACCCAAACCCTCGCACTACGTCACCGTATTCCTGCGGGCGAAGCTGGAAGACGAT CAAGTTCCTCAAAATATGGAGCCTGAGAAGTGCTACGGTTGGGATTGGTACAATTGGGAAGACCTCCCTTCGCCGCTCTTCTGGCCGCTGGAGAAGATGG TGAAAAGCGGATTCAATCCTTTTGCTCAATGA
AA sequence Show only first row Show all	>Lus10033325 pacid=23172067 polypeptide=Lus10033325 locus=Lus10033325.g ID=Lus10033325.BGIv1.0 annot-version=v1.0 MEPPTPSPKVAVVLFLLKGKSSVLLGRRRSSIGDSTFALPGGNLEFGESFEECAIRELKEETGLMVHETEFLTVTNNVFVESPKPSHYVTVFLRAKLEDD QVPQNMEPEKCYGWDWYNWEDLPSPLFWPLEKMVKSGFNPFAQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68760		ATNUDX1, ATNUDT...	NUDIX HYDROLASE 1, ARABIDOPSIS...		Lus10033325 [exp]	0	1
AT1G68760		ATNUDX1, ATNUDT...	NUDIX HYDROLASE 1, ARABIDOPSIS...		Lus10034784 [exp]	3.9	0.9116
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010067 [exp]	5.4	0.9244
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10043449 [exp]	7.1	0.9225
AT5G09310			unknown protein		Lus10037415 [exp]	12.6	0.8911
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10002075 [exp]	13.2	0.9128
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Lus10017762 [exp]	14.1	0.8889
AT4G30170			Peroxidase family protein (.1)		Lus10001442 [exp]	17.7	0.9120
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021103 [exp]	21.0	0.9099
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10003134 [exp]	22.4	0.9113
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10029417 [exp]	24.0	0.8998

Compare expression of checked genes

Lus10033325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.