Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32910 460 / 6e-160 HXXXD-type acyl-transferase family protein (.1) AT1G78990 453 / 2e-157 HXXXD-type acyl-transferase family protein (.1) AT5G16410 416 / 1e-142 HXXXD-type acyl-transferase family protein (.1) AT1G31490 234 / 6e-72 HXXXD-type acyl-transferase family protein (.1) AT5G41040 130 / 3e-33 HXXXD-type acyl-transferase family protein (.1.2) AT5G48930 109 / 7e-26 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT3G03480 105 / 2e-24 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G63560 100 / 6e-23 HXXXD-type acyl-transferase family protein (.1) AT2G19070 98 / 6e-22 SHT spermidine hydroxycinnamoyl transferase (.1) AT3G48720 95 / 5e-21 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006333 [exp] 528 / 0 AT1G32910 428 / 5e-148 HXXXD-type acyl-transferase family protein (.1) Lus10034786 [exp] 472 / 3e-166 AT1G32910 334 / 7e-112 HXXXD-type acyl-transferase family protein (.1) Lus10023806 [exp] 230 / 2e-70 AT1G31490 511 / 3e-180 HXXXD-type acyl-transferase family protein (.1) Lus10035190 [exp] 127 / 4e-32 AT5G41040 419 / 5e-144 HXXXD-type acyl-transferase family protein (.1.2) Lus10025523 [exp] 123 / 1e-30 AT5G41040 406 / 3e-139 HXXXD-type acyl-transferase family protein (.1.2) Lus10012552 [exp] 122 / 3e-30 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10039329 [exp] 119 / 2e-29 AT5G41040 398 / 5e-136 HXXXD-type acyl-transferase family protein (.1.2) Lus10026123 [exp] 115 / 8e-28 AT5G48930 597 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10010786 [exp] 114 / 1e-27 AT5G48930 451 / 5e-157 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G003800 [exp] 492 / 5e-172 AT1G32910 533 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.001G128100 [exp] 226 / 4e-69 AT1G31490 607 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.018G104700 [exp] 125 / 3e-31 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.014G166600 [exp] 121 / 4e-30 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.017G068500 [exp] 112 / 6e-27 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.018G105500 [exp] 110 / 4e-26 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G326300 [exp] 108 / 1e-25 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.015G100800 [exp] 107 / 3e-25 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.001G042900 [exp] 106 / 9e-25 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G109900 [exp] 105 / 1e-24 AT2G19070 563 / 0.0 spermidine hydroxycinnamoyl transferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10033327 pacid=23172056 polypeptide=Lus10033327 locus=Lus10033327.g ID=Lus10033327.BGIv1.0 annot-version=v1.0 ATGGATCCCCTCCAGCGGCGGCGGAAACAGCTTTGCCGTGACGCTGGGGAAGAAGCAGGTGGTGGCGGCGGCGCTTCCGATGCAGGAGCATTGGCTGCCG CTCTCCAACCTCGACCTCCTTCTTCCGCCGGTCGACGTCGGGGTCTGCCGCCGTTCGACGTCGGGGTCTTCTTCTGTTGCTCCGACGGCGGTGGTGCAGC GGCGGTCGGGATACTGAAGAAGGGGCTGGCGCAGGCGCTGGTGACGTACTACGCCTTCGCCGGCGAGGTGGTGATAAGCTCCGGCGGCGAACCGGAGATT GTGTGCAACAACCGTGGAGTTGAGTTCTGGGAGGCGTATGCTGACGTGGAGCTCGGGGAGCTTGACTTGTATAACCCCGACGACGCCGTTGAAGGCAAGC TTGTCCCCGTTAAGAAAGACGGCGTCTTCGCTGTTCAGGTGACGGAACTAAGATGCGGGGGAATAGTGGTGGGATGCTCCTTCGACCACCGCATTGCCGA TGCCTATTCATGCAACATGTTCCTCGTCGCATGGGCCGAGTCCACCAGATCCAAGCCCATCTCCTCCCCGCCTTCCTTCCGTCGTTCTTTACTCAACCCT CGCCGTCCCCTTGCACTAGACTCCACCCTCGACGACATGTACGTCCCGTTATCAAGCCTCCCTCCGCCTCCGCCTCCTTCCCCAGCCGACCCTGTCCTCC TCAGCCGCATCTACTACGTCAAGTCTGGTGACCTAGCAGCCCTCCAGTCCCTCACATCCAGAACCAAGCTCGAATCCTTCTGCGCATTCCTCTGGCAGCT CGTCGCCAAATCCTCCCGCTCCGACGTCGTATCCAAGATGGGGATCGTGGTCAACGGACGGTCCAGATTGACCGATATGGACAGATACTTCGGGAACGTA CTGTCGATCCCTTACGGCGGGAAGCCCGTGGGGGAGCTGGTGGAGTCTTCGCTGAGCCGCGTGGCGGACGGGGTCCACGAGTTTTTGGAGAAAGGAGCGA CCGGGGACCACTTCATGGGCCTGGTAGACTGGGTGGAGGCCCACAGGCCTGAGCCTGCGATCTCGAAGATTTATAGTTGTGGGGCGGCGGAAGGGCCTGC ATTTGTGGTTTCGTCGGGTCGTGGGTTCCCTATCGGGGAGGTGGATTTCGGATGGGGTCGGCCGGTTTTCGGGTCATACCATTTCCCATGGGGAGGGAGT GCCGGTTACGTGATGCCGATGCCGAGTCCGAAGAAGGAATCGGGGGATTGGGTCGTGTATATGCATTTGTTCGAGGAGCAGTTGGAGGTTATTGAGAAGG AAGGCGCGTCTGTTTTCAGGCCTTTCAGATGGGACTGCGTCGTTTAA
AA sequence Show only first row Show all	>Lus10033327 pacid=23172056 polypeptide=Lus10033327 locus=Lus10033327.g ID=Lus10033327.BGIv1.0 annot-version=v1.0 MDPLQRRRKQLCRDAGEEAGGGGGASDAGALAAALQPRPPSSAGRRRGLPPFDVGVFFCCSDGGGAAAVGILKKGLAQALVTYYAFAGEVVISSGGEPEI VCNNRGVEFWEAYADVELGELDLYNPDDAVEGKLVPVKKDGVFAVQVTELRCGGIVVGCSFDHRIADAYSCNMFLVAWAESTRSKPISSPPSFRRSLLNP RRPLALDSTLDDMYVPLSSLPPPPPPSPADPVLLSRIYYVKSGDLAALQSLTSRTKLESFCAFLWQLVAKSSRSDVVSKMGIVVNGRSRLTDMDRYFGNV LSIPYGGKPVGELVESSLSRVADGVHEFLEKGATGDHFMGLVDWVEAHRPEPAISKIYSCGAAEGPAFVVSSGRGFPIGEVDFGWGRPVFGSYHFPWGGS AGYVMPMPSPKKESGDWVVYMHLFEEQLEVIEKEGASVFRPFRWDCVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10033327 [exp]	0	1
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10034786 [exp]	1.0	0.9920
AT1G78990			HXXXD-type acyl-transferase fa...		Lus10000557 [exp]	1.4	0.9465
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10039686 [exp]	2.2	0.9386
AT2G21100			Disease resistance-responsive ...		Lus10025065 [exp]	3.9	0.9424
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10034547 [exp]	4.0	0.9419
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10021320 [exp]	6.0	0.9169
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10016388 [exp]	6.5	0.9386
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10021428 [exp]	7.9	0.9235
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10029425 [exp]	8.4	0.8706
AT3G08680			Leucine-rich repeat protein ki...		Lus10025210 [exp]	9.9	0.9368

Compare expression of checked genes

Lus10033327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.