Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13000 654 / 0 Protein of unknown function, DUF547 (.1.2) AT1G16750 503 / 3e-173 Protein of unknown function, DUF547 (.1) AT5G47380 199 / 9e-56 Protein of unknown function, DUF547 (.1) AT5G66600 189 / 3e-52 Protein of unknown function, DUF547 (.1.2.3.4) AT5G42690 166 / 8e-45 Protein of unknown function, DUF547 (.1.2.3) AT4G37080 161 / 3e-42 Protein of unknown function, DUF547 (.1.2.3) AT3G12540 155 / 9e-41 Protein of unknown function, DUF547 (.1) AT2G23700 157 / 2e-40 Protein of unknown function, DUF547 (.1) AT3G18900 149 / 1e-38 unknown protein AT2G39690 147 / 1e-37 Protein of unknown function, DUF547 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034787 [exp] 1063 / 0 AT3G13000 710 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10037293 [exp] 800 / 0 AT3G13000 663 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10035703 [exp] 637 / 0 AT1G78980 746 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10039917 [exp] 447 / 2e-150 AT1G16750 457 / 1e-155 Protein of unknown function, DUF547 (.1) Lus10027653 [exp] 444 / 5e-149 AT3G13000 459 / 4e-156 Protein of unknown function, DUF547 (.1.2) Lus10016786 [exp] 213 / 2e-60 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10022480 [exp] 206 / 4e-58 AT5G66600 662 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10007795 [exp] 190 / 3e-51 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1) Lus10032768 [exp] 144 / 2e-36 AT4G37080 495 / 3e-171 Protein of unknown function, DUF547 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G003900 [exp] 753 / 0 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2) Potri.006G216800 [exp] 469 / 6e-159 AT3G13000 437 / 1e-147 Protein of unknown function, DUF547 (.1.2) Potri.007G033100 [exp] 199 / 8e-56 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.005G130000 [exp] 193 / 2e-53 AT5G66600 664 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.001G157200 [exp] 191 / 9e-53 AT5G47380 642 / 0.0 Protein of unknown function, DUF547 (.1) Potri.009G111100 [exp] 187 / 3e-51 AT5G66600 466 / 5e-158 Protein of unknown function, DUF547 (.1.2.3.4) Potri.004G150000 [exp] 182 / 2e-49 AT5G66600 447 / 2e-150 Protein of unknown function, DUF547 (.1.2.3.4) Potri.010G202900 [exp] 173 / 9e-47 AT2G39690 493 / 9e-171 Protein of unknown function, DUF547 (.1.2) Potri.007G041100 [exp] 159 / 1e-41 AT4G37080 577 / 0.0 Protein of unknown function, DUF547 (.1.2.3) Potri.002G001900 [exp] 155 / 2e-40 AT1G76620 414 / 1e-139 Protein of unknown function, DUF547 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04784 [flax] [poplar] DUF547 Protein of unknown function, DUF547
Representative CDS sequence Show only first row Show all	>Lus10033328 pacid=23172224 polypeptide=Lus10033328 locus=Lus10033328.g ID=Lus10033328.BGIv1.0 annot-version=v1.0 ATGGCTCAGCTTCCTTTCAATGGTCTTTTGCTTTATCTTACTTTGGTCTTTTTCCACAGAAATGAAGCCATTTCTAGAACTTCCACTTCTGGTGCAACAT ATGGCAACTCAGCAACCCAGTTAGATCTTGTGAACGAATATTGGTGCAGTGATTCTAAAGTTTCGGCCAGCAACATGACAGAATCTACAAGTAGCTCCGG TTCAAACGTTAAATTGGAAACATATTATCCTTCTAGAATCCAACTTGAGAAAGATGTACAAAGGTTAAAGCAGCAATTGCAAGCAGAGATTGAAATACAT GAGATACTGGAAAGTGCTATTGAGAAAAGTGCAGCAACACTATCTTCTTTCTCATGCCTCCCACATGAAGCTCAGGAGGTTCTCTCTACGATAGCAGTAC TGGAAGTCACAGTTACAGAACTTGAACAAAAGATTCTCTCATTACATTTCCAACTTAGTCAAGAGAGAAATGAGCGGCGCCTTACTGAATACCGCCTGAA GCATGCATCACTGCCTTCAGTGTCTGTTTGCACCTCTGACAACAACAAAATAATGATTCCTTCATTGAGATGTACATATCATTTTGATTCCGAACTTGTT AACTTGAATGGAGATATGTTACTGGAGCACCAAGGCGTGGGGCCTACAACTTCCGCAGAAACTTCTTGTTCTCACGTTGCTAAGGATGCAATCAGGTCAA CATCTTCTTTGGACAGCAAGAGAGAAAGTATAAAGACAGGAACCAAACTTAGTCAGCATCTGAAACCCACGCTCTCAAAGGGAATGATATCGAAGGGCCT CTGGGATCACCCTAATAAACTTTCTGAGGAGATGGTGAAGTGTATGAAAAATATATTCATCTGCTTAGCGGATTCTGCTACACCATCCAAGTCATCTACT TTGGATAGTGAGTCTTCACCTGTCTCTCCTCGTGGGCATCTTTCTAATTCATCATGGTGGTCATCATCCGAGCGCTCTATATTATCATCATGGGTCCAGA GCCCTCAAGTCGATGTCCAAAGTAACAACGAAGTGTTATCTTCCGAGAATGTGTTTGATCCCTACAGAGTGCGTGGGAAATTAAGCTGGGCTGACATCGG GAACTATGGCTTAGCCACTGAAGTCTCTTGGATGTCTGTTGGAAATAAACAATTAGATTATGCCTCCGGAGCATTGAGGAAGTTCAGAACACTCGTGGAA AAATTGGCCAAAGTGAACCCTATTCACTTGAGCTGCAATGAGAAGCTGGCTTTCTGGATCAACTTGTACAATGCACTGATCATGCATGCTTACTTGGCTT ACGGAGTTCCCCGAAGCGACTTGAAACTGTTTTCTTTGATGCAAAAGGCTGCTTATACTGTCGGAGGCCATTCGTTCAGCGCAGCTGTGATTGAGTATGC GATTTTGAAGATGAAACCTCCTCTCCACAGACCACAAATTGCATTGCTTCTTGCTCTCCACAAACTGAAGGTGTCAGATGAACAACGCAAGTGTGCAGTT GATGCACATGAGCCGCTTGTAGCATTTGCACTGAGTTGTGGAATGTATTCATCTCCTGCGGTGAGGGTTTACACGGCTAAGAATGTAAGAGAAGAGCTTG AAGAAGCTCAGCACGAGTTCATAAGGGCTAGCGTCGGGGTGAGCAGCAGAGGGAAGCTTTTGGTGCCTAAGTTGGTGCACTGCTTTGCTAAAAGCGTTGT GGATGACTCGAACTTGGCAGTATGGATCTCTCATTACCTGCCACCTAATCAGGCTGTCTTTGTTGAGCAATGTATTTCGCAGAGGCGGCGACAAAGCCTC TTGGCTTCCAGGAACTGTGGAATCCTGCCTTTTGATTCTCAATTTCGGTACCTGTTCCTTCCTGACAAACTTTCAATGCCTTGA
AA sequence Show only first row Show all	>Lus10033328 pacid=23172224 polypeptide=Lus10033328 locus=Lus10033328.g ID=Lus10033328.BGIv1.0 annot-version=v1.0 MAQLPFNGLLLYLTLVFFHRNEAISRTSTSGATYGNSATQLDLVNEYWCSDSKVSASNMTESTSSSGSNVKLETYYPSRIQLEKDVQRLKQQLQAEIEIH EILESAIEKSAATLSSFSCLPHEAQEVLSTIAVLEVTVTELEQKILSLHFQLSQERNERRLTEYRLKHASLPSVSVCTSDNNKIMIPSLRCTYHFDSELV NLNGDMLLEHQGVGPTTSAETSCSHVAKDAIRSTSSLDSKRESIKTGTKLSQHLKPTLSKGMISKGLWDHPNKLSEEMVKCMKNIFICLADSATPSKSST LDSESSPVSPRGHLSNSSWWSSSERSILSSWVQSPQVDVQSNNEVLSSENVFDPYRVRGKLSWADIGNYGLATEVSWMSVGNKQLDYASGALRKFRTLVE KLAKVNPIHLSCNEKLAFWINLYNALIMHAYLAYGVPRSDLKLFSLMQKAAYTVGGHSFSAAVIEYAILKMKPPLHRPQIALLLALHKLKVSDEQRKCAV DAHEPLVAFALSCGMYSSPAVRVYTAKNVREELEEAQHEFIRASVGVSSRGKLLVPKLVHCFAKSVVDDSNLAVWISHYLPPNQAVFVEQCISQRRRQSL LASRNCGILPFDSQFRYLFLPDKLSMP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13000			Protein of unknown function, D...		Lus10033328 [exp]	0	1
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Lus10040427 [exp]	2.0	0.8511
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Lus10025719 [exp]	4.2	0.8509
AT1G79030			Chaperone DnaJ-domain superfam...		Lus10043089 [exp]	4.9	0.8395
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10023598 [exp]	6.6	0.8537
AT1G67080		ABA4	abscisic acid (aba)-deficient ...		Lus10009168 [exp]	7.9	0.8335
					Lus10035486 [exp]	9.4	0.8399
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Lus10037081 [exp]	10.2	0.8321
					Lus10035529 [exp]	11.7	0.8200
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10005340 [exp]	13.4	0.8256
AT3G29290		EMB2076	embryo defective 2076, Pentatr...		Lus10025637 [exp]	14.1	0.8266

Compare expression of checked genes

Lus10033328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.