Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 731 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 705 / 0 EFR EF-TU receptor (.1) AT3G47110 676 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 669 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 659 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 426 / 1e-132 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 427 / 3e-131 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT3G49670 404 / 3e-124 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 387 / 6e-118 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G28440 385 / 2e-117 HSL1 HAESA-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033330 [exp] 1628 / 0 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033362 [exp] 1214 / 0 AT3G47570 784 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031043 [exp] 1153 / 0 AT3G47570 756 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035429 [exp] 1123 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037310 [exp] 957 / 0 AT3G47570 744 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033363 [exp] 941 / 0 AT3G47570 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033384 [exp] 936 / 0 AT3G47570 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035726 [exp] 926 / 0 AT3G47570 716 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037311 [exp] 793 / 0 AT3G47570 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G007866 [exp] 781 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 773 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 771 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 770 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 768 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G152500 [exp] 765 / 0 AT3G47570 753 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 762 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 761 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G044500 [exp] 759 / 0 AT3G47570 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 756 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033329 pacid=23172075 polypeptide=Lus10033329 locus=Lus10033329.g ID=Lus10033329.BGIv1.0 annot-version=v1.0 ATGACACAAATAAAAAACTCTTCAATCCGCTCAGGTCGACTTAATTTCCTGAAGCTTCTACTACTTCCAATACTCCTCTCATTCAACTTCCCCTGCCAAT CAAACGCTGTCGGAAGCAATGAAACTGACCGACTCGCCTTGCTCGATTTCAAGAAATCAGTAACAAACGATCCGGACAGAGTTCTAAACTCCTGGAACAA CTCCCTCCATTTCTGCAACTGGCAAGGCATCACCTGCAGCCAACAACAACAACAACAAAGAGTCATTTCCTTACACTTACCAGGCCACAACCTAGGTGGC AGACTTTCATCTCACATTGGGAACTTGACATCTCTCCAATCCATTAACCTCGAGACCAATGGCTTCAGCGGCCAGATCCCTTCGAATTTAGGGAATCTTG CCCTCCTTCATACCCTGAATCTCACAAGGAACTTACTTCGTGGCGAGATTCCGGTCAATCTGACGCGTTGCTCCCAGCTCACGGAAATCGGGCTGTCAGG CAACGGTTTGGTAGGGAACATTCCTGAGGAAATTGGGGTTTTATCGAATTTAAAAATCCTCAAGTTATCCCATAATAACCTGACAGGAAAAATCCCAGCT TCTTTAGGAAACCTGACACAGCTCCAGGATTTTCGTGCTGCCTATAACAATCTGGTGGGTGAAATTCCTGAGACGGTGGGTCAACTCTCCAAATTAAGCT TTTTTGTAGTTGGGGTAAACCAACTTACTGGTGAAGTTCCTCCTTCTCTCTACAATCTGTCATCCATGATCACCTTGACTTTGGTCTACAACCAATTTGA AGGAAGAATCCCGGAGGATATTGGGTTCACTCTTCCAAATCTACAGAACTATGGAAACTCTCGAAACTTGATGTATGGCCCGATTCCAGAATCTTTGTGC AATGCTTCTCAGTTGTCTGACGTCAACATGAACAGAAACAGCTTCACTGGCAGGATTCCATCTTGTTTGGGGAGTTTACAGCAACTTCTGCACTTCAACG CAGGAGGCAATAACCTTGGTACCAATTCATCAGGTGATTTCGAATTTGTAACGGGTTTGAGTAATTGCAGCCTTCTTGGGGAATTGGGTGTCGACTTGAA TAATCTTGGAGGGCCTTTACCGGCTTCTGTTGGAAATCTATCAGCTCAGCTATATCAATTGACCCTTGGGTACAATCCAATCAAAGGGAATATTCCTGAT GGGTTAGAGAATTTGGTCAACTTGAATAAATTGGACCTCTCTTATAATCTTTTCACAGGTTCAATTCCTAGCTATATTGGTAAGTTTGTGGATTTGCAAG GTTTATGGATGCAAGGGAATTATTTGACAGGTCCGATTCCTTTGTCGGTTGGAAACCTGACAAAGTTGAATCTATTTGACATTTCGAATAATGGACTCAA AGGAGCCATTCCTTTCAGTATGGGGAATTGCCAGCAGCTGAACCAACTGGATGTATCCGCAAACAGACTCACTGGCGAAATACCCGGAGTGGTGTTCATG CTTTCTTCCCTGTCAAGTGGATTGAACCTTTCTCGTAACTCTTTCAACGGGAGCCTCGGTAATGAGATTGGGAATCTCACAAATCTTGAACTCTTGGATG TGTCTTACAATAATCTGACAGGGGGGATTCCTGCATCAATTGGTGATTGCAAGACTCTGAAAATATTGTTTATGCAGGAGAATTCTTTGAATGGAACGAT TCCTGAAGCTATGGCATCACTCCAAGGCATCGAAAGCTTGGATCTTTCCAGGAACCATTTCACAGGAGGAATTCCTATTGGATTGCAGAAGGTTGAAGCT CTGAAACATTTGAATCTTTCATTCAATGATCTTCAAGGTGAGGTTCCAACGAAAGGGATATTCAGAAATTCGACTGGCATATCTCTGATCGGTAACACTA TGCTTTGTGGTGGAGTCTCAAACCTCCATTTGCAAGACTGCCCCAATAAAGCAACAACCAAGCAAAAAAGACTTGCTACTATTAAGCTGACACTTATAAT TGTATTGGTCTCGCTTTCTTTATTTTCACTATTGGGGTTACTTTACTTGTTCAAAGTAAGAAGATCAAAGAAACAAAATTCAGTTGAAGATTCTGCTCTA ACCCACTTTGTGATGGTTTCCTACAAAGAACTCCACAAAGGAACAAATGGCTTCTCCTCAGATAACTTGATTGGATCAGGTGGGTTTGGCACCATCTACA AAGGAGTACTGGATCAAATGAATACATCAGTAGCTATCAAAGTACTCAACATTCAAGAAAAGAATGCTTACAAGAGCTTAGTGGCAGAGTGTAATGCATT GAAGAACGTCCGACACAGGAATCTTGTTAGGATCCTAACATACTGCTCTAGCTTGGACCATAAGGGCAATGATTTCAAGGCTTTGGTGTTCGAGTTCATG TCAAATGGGAGCTTAGATGACTGGCTTCATCACTCAGGTCGAAAATTGAGCCTGGTCCAAAGGCTTAACATTGCAGTGGACGTGGCATCCGCACTGCAAT ATCTCCATGACGATTGTGAAACTCCGATTGTTCATTGTGACTTGAAACCGAGCAATGTACTCCTGGATGCTGATATGCTTGCTCGTGTTGGAGACTTTGG TCTGGCCAGGATTCTGTCAACCAACAACAAAAACAGCAGCATGATCAGTTCGCCGCGAAGCCAAAGTAGCACCATTGGAATCAGAGGAACAATTGGTTAC GCCCCACCAGAATACGGGATGGCAGTTGCAGCGTACAAAGAAGGGGATGTGTACAGCTACGGAATCCTGATACTAGAGATGTTCACAGGGAAAAGACCCA CCGACGAAATGTTCAAGGATGGGCTGAACCTTCGAGACTTGGTTAAGGAAGCAATCCCAGGAAGAATATTATCCGTACTGGATCCGTCAATGGAGCTGTC GGCAGCTGCAGGTGGAGGCGTAGATGCAATTAAAGTGGAGGAAATAATGGAAATGACGGAAAGTGGAAGAGACTGTTTGGTTTCGGTTCTTGACATTGGT GTGCGTTGTGCTGCAGAGTTGTGTAGAGAGCGTATGAAGATGGGTGATGTTGCCAGGAAGATGGTTTCTCTCCGGGATGTTTATGTTGCATCTACCTCTG CCCCTAGGCGCACGCCAGAACGTGGCTGA
AA sequence Show only first row Show all	>Lus10033329 pacid=23172075 polypeptide=Lus10033329 locus=Lus10033329.g ID=Lus10033329.BGIv1.0 annot-version=v1.0 MTQIKNSSIRSGRLNFLKLLLLPILLSFNFPCQSNAVGSNETDRLALLDFKKSVTNDPDRVLNSWNNSLHFCNWQGITCSQQQQQQRVISLHLPGHNLGG RLSSHIGNLTSLQSINLETNGFSGQIPSNLGNLALLHTLNLTRNLLRGEIPVNLTRCSQLTEIGLSGNGLVGNIPEEIGVLSNLKILKLSHNNLTGKIPA SLGNLTQLQDFRAAYNNLVGEIPETVGQLSKLSFFVVGVNQLTGEVPPSLYNLSSMITLTLVYNQFEGRIPEDIGFTLPNLQNYGNSRNLMYGPIPESLC NASQLSDVNMNRNSFTGRIPSCLGSLQQLLHFNAGGNNLGTNSSGDFEFVTGLSNCSLLGELGVDLNNLGGPLPASVGNLSAQLYQLTLGYNPIKGNIPD GLENLVNLNKLDLSYNLFTGSIPSYIGKFVDLQGLWMQGNYLTGPIPLSVGNLTKLNLFDISNNGLKGAIPFSMGNCQQLNQLDVSANRLTGEIPGVVFM LSSLSSGLNLSRNSFNGSLGNEIGNLTNLELLDVSYNNLTGGIPASIGDCKTLKILFMQENSLNGTIPEAMASLQGIESLDLSRNHFTGGIPIGLQKVEA LKHLNLSFNDLQGEVPTKGIFRNSTGISLIGNTMLCGGVSNLHLQDCPNKATTKQKRLATIKLTLIIVLVSLSLFSLLGLLYLFKVRRSKKQNSVEDSAL THFVMVSYKELHKGTNGFSSDNLIGSGGFGTIYKGVLDQMNTSVAIKVLNIQEKNAYKSLVAECNALKNVRHRNLVRILTYCSSLDHKGNDFKALVFEFM SNGSLDDWLHHSGRKLSLVQRLNIAVDVASALQYLHDDCETPIVHCDLKPSNVLLDADMLARVGDFGLARILSTNNKNSSMISSPRSQSSTIGIRGTIGY APPEYGMAVAAYKEGDVYSYGILILEMFTGKRPTDEMFKDGLNLRDLVKEAIPGRILSVLDPSMELSAAAGGGVDAIKVEEIMEMTESGRDCLVSVLDIG VRCAAELCRERMKMGDVARKMVSLRDVYVASTSAPRRTPERG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10033329 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Lus10033330 [exp]	1.0	0.9788
AT2G39420			alpha/beta-Hydrolases superfam...		Lus10040328 [exp]	7.7	0.9391
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10015018 [exp]	8.2	0.9558
AT5G36930			Disease resistance protein (TI...		Lus10007821 [exp]	9.6	0.9554
					Lus10006284 [exp]	10.4	0.9447
AT5G53110			RING/U-box superfamily protein...		Lus10032382 [exp]	13.5	0.9463
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10011658 [exp]	13.5	0.9413
					Lus10017917 [exp]	16.1	0.9512
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10032024 [exp]	18.2	0.9439
AT2G23790			Protein of unknown function (D...		Lus10016799 [exp]	20.3	0.9475

Compare expression of checked genes

Lus10033329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.