Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 745 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 704 / 0 EFR EF-TU receptor (.1) AT3G47110 687 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 672 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 672 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 477 / 3e-150 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT3G49670 432 / 5e-135 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 415 / 2e-128 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G48940 402 / 2e-122 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G26330 393 / 2e-120 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033329 [exp] 1661 / 0 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033362 [exp] 1251 / 0 AT3G47570 784 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031043 [exp] 1157 / 0 AT3G47570 756 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035429 [exp] 1136 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033363 [exp] 981 / 0 AT3G47570 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033384 [exp] 975 / 0 AT3G47570 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037310 [exp] 967 / 0 AT3G47570 744 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035726 [exp] 955 / 0 AT3G47570 716 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037311 [exp] 841 / 0 AT3G47570 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G007866 [exp] 806 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 795 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 783 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 780 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 777 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 776 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 773 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 771 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 771 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G020000 [exp] 766 / 0 AT3G47570 816 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033330 pacid=23172228 polypeptide=Lus10033330 locus=Lus10033330.g ID=Lus10033330.BGIv1.0 annot-version=v1.0 ATGATGAAACAAGTGCAAAACTCTTCAATTTTAAAACTTCTACTACTTCCACTACTCCTCTCATTCAACTTCCCCTGCCAATCAAACGCTTCGGGAAGCA ACGAAACTGACCAACTCGCCTTGCTCGAATTCAAGAAATCAATAACAAACGATCCGGACGGAGTACTAAACTCCTGGAATGACTCCCTCCATTTTTGCAA TTGGGAAGGCATCACCTGCCGCCAAGAACTACAACAAAGAGTCATTTCCCTAATCTTACCAGGCCACAACCTGGCTGGCACTCTTTCACCTCACATCGGA AACATGACGTCTCTTGAATCCATTAACCTCATGTTCAACAGCTTCAGGGGTGAGATCCCTTCGATTTTTGGGAATCTCGCACACCTTCGGACCCTGAATC TCAGCAGGAACCTGCTCCATGGCGAGTTTCCGTTCAACCTGACGCGCTGCTCCCAGCTGAGAGAAATCTGGCTGGTAGGCAACAGTTTGGTAGGAAAAAT CCCTGAAGAAATCGGGGTTTTATCGAATTTAAAAGTCCTCAGGATATCGAGTAATAACCTGACAGGAAATATCCCAGCTTCTTTAGGCAACCTGTCAGAG CTTCAGAATTTCGGGGTTCCTTACAACAATCTGGCAGGTCCGATTCCTGAAACAGTGGGTCGACTCTCCAAATTAAGCCGGTTTGTAGTTGGGGTAAACC AGCTTACAGGTCAAGTTCCTCCTTCTCCTTACAATTTGTCATCCATTACCATCCTGACACTGGTCTACAACCAATTTGAAGGAAGAATCCCGGAGGACAT CGGGTTGACTCTTCCAAATCTAGCGCAGTACGGAAACTCTCGAAACTTGATGTATGGGCCTATTCCAGAATCTTTGTGCAATGCTTCTCAATTGTCTGAC GTCAACATGAATAGGAACAGCTTCACTGGAAGGATTCCATCTTGTTTGGGGAATTTACAACAACTCAAGTACTTTCACGCAGGAGCTAATAATCTTGGTT CCAATTCATCTGGTGATTTCGAATTCATAACGAGCTTGAGTAATTGCAGCCTTCTTCAGGAATTGGGTGTCAGCCTCAATAGCCTTGGAGGGCCTTTACC AGCTTCTGTTGGGAATTTGTCAGTCCAGCTTTATCAATTGGATCTTGCCTTTAATCCGATCAGAGGGAATGTTCCTGGTGGCTTGGAGAATTTAGTCAAC TTGAATAAAGTGGACCTGTCTTATAATCTTTTCACAGGTTCCATTCCTAGCTATATTGGCAAGTTCAAGAATTTGCAAGGTTTATGGATGCAAGGGAATT ATTTGACAGGTCCGATTCCTTTGTCGGTTGGAAACCTGACAAAGTTGAATCTATTTGACATTTCGAATAATGGACTCAAAGGAGCCATTCCTTTCAGTAT GGGGAATTGCCAGCAGCTGAACCAACTGGATGTATCCGCAAACAGACTCACTGGCGAAATACCCGGAGTGGTGTTCATGCTTTCTTCCCTGTCAAGTGGA TTGAACCTTTCTCGTAACTCTTTCAACGGGAGCCTCGGTAATGAGATTGGGAATCTCACAAATCTTGAACTCTTGGATGTGTCTTACAATAATCTGACAG GGGGGATTCCTGCATCAATTGGTGATTGCAAGACTCTGAAAATATTGTTTATGCAGGAGAATTCTTTGAATGGAACGATTCCTGAAGCTATGGCATCACT CCAAGGCATCGAAAGCTTGGATCTTTCCAGGAACCATTTCACAGGAGGAATTCCTATTGGATTGCAGAAGGTTGAAGCTCTGAAACATTTGAATCTTTCA TTCAATGATCTTCAAGGTGAGGTTCCAACGAAAGGGATATTCAGAAATTCGACTGGCATATCTCTGATCGGTAACACTATGCTTTGTGGTGGAGTCTCAA ACCTCCATTTGCAAGACTGCCCCAATAAAGCAACAACCAAGCAAAAAAGACTTGCTACTATTAAGCTGACACTTATAATTGTATTGGTCTCGCTTTCTTT ATTTTCACTATTGGGGTTACTTTACTTGTTCAAAGTAAGAAGATCAAAGAAACAAAATTCAGTTGAAGATTCTGCTCTAACCCACTTTGTGATGGTTTCC TACAAAGAACTCCACAAAGGAACAAATGGCTTCTCCTCAGATAACTTGATTGGATCAGGTGGGTTTGGCACCATCTACAAAGGAGTACTGGATCAAATGA ATACATCAGTAGCTATCAAAGTACTCAACATTCAAGAAAAGAATGCTTACAAGAGCTTAGTGGCAGAGTGTAATGCATTGAAGAACGTCCGACACAGGAA TCTTGTTAGGATCCTAACATACTGCTCTAGCTTGGACCATAAGGGCAATGATTTCAAGGCTTTGGTGTTCGAGTTCATGTCAAATGGGAGCTTAGATGAC TGGCTTCATCACTCAGGTCGAAAATTGAGCCTGGTCCAAAGGCTTAACATTGCAGTGGACGTGGCATCCGCACTGCAATATCTCCATGACGATTGTGAAA CTCCGATTGTTCATTGTGACTTGAAACCGAGCAATGTACTCCTGGATGCTGATATGCTTGCTCGTGTTGGAGACTTTGGTCTGGCCAGGATTCTGTCAAC CAACAACAAAAACAGCAGCATGATCAGTTCGCCGCGAAGCCAAAGTAGCACCATTGGAATCAGAGGAACAATTGGCTACGCCCCACCAGAATACGCGATG GGGGATAGAGTGTGCAAAGAAGGCGATGTGTATAGCTACGGAATCCTGATACTAGAGATGTTCACAGGAAAAAGACCCACCGACGAAATGTTCAAAGACG GGATGAATCTCCGTGACTTGGTTCGGGAAGCAACTCCTGCTGGCAGAATATTATCTGTACTGGACCCATCAATGGGTGTGCCGGTAGCAGCAGCAGGTGA TGGAAGAAGTGAAGTGGAGGAAATGGAATTAACAGAAAGTGGGAGAGAATGTTTGAGTTGCGTGCTTGAAACTGCTGTGAATTGTGCTGCAGAGCTGTGT AAAGAGCGTATGAAGATGGGTGATGTTGCCAGGAAGCTAATTTCTGCCAGGGATGTTTTCATTGCATCTACCTCTGCCCCAATGCGCATGCCAGAACGTG GCTGA
AA sequence Show only first row Show all	>Lus10033330 pacid=23172228 polypeptide=Lus10033330 locus=Lus10033330.g ID=Lus10033330.BGIv1.0 annot-version=v1.0 MMKQVQNSSILKLLLLPLLLSFNFPCQSNASGSNETDQLALLEFKKSITNDPDGVLNSWNDSLHFCNWEGITCRQELQQRVISLILPGHNLAGTLSPHIG NMTSLESINLMFNSFRGEIPSIFGNLAHLRTLNLSRNLLHGEFPFNLTRCSQLREIWLVGNSLVGKIPEEIGVLSNLKVLRISSNNLTGNIPASLGNLSE LQNFGVPYNNLAGPIPETVGRLSKLSRFVVGVNQLTGQVPPSPYNLSSITILTLVYNQFEGRIPEDIGLTLPNLAQYGNSRNLMYGPIPESLCNASQLSD VNMNRNSFTGRIPSCLGNLQQLKYFHAGANNLGSNSSGDFEFITSLSNCSLLQELGVSLNSLGGPLPASVGNLSVQLYQLDLAFNPIRGNVPGGLENLVN LNKVDLSYNLFTGSIPSYIGKFKNLQGLWMQGNYLTGPIPLSVGNLTKLNLFDISNNGLKGAIPFSMGNCQQLNQLDVSANRLTGEIPGVVFMLSSLSSG LNLSRNSFNGSLGNEIGNLTNLELLDVSYNNLTGGIPASIGDCKTLKILFMQENSLNGTIPEAMASLQGIESLDLSRNHFTGGIPIGLQKVEALKHLNLS FNDLQGEVPTKGIFRNSTGISLIGNTMLCGGVSNLHLQDCPNKATTKQKRLATIKLTLIIVLVSLSLFSLLGLLYLFKVRRSKKQNSVEDSALTHFVMVS YKELHKGTNGFSSDNLIGSGGFGTIYKGVLDQMNTSVAIKVLNIQEKNAYKSLVAECNALKNVRHRNLVRILTYCSSLDHKGNDFKALVFEFMSNGSLDD WLHHSGRKLSLVQRLNIAVDVASALQYLHDDCETPIVHCDLKPSNVLLDADMLARVGDFGLARILSTNNKNSSMISSPRSQSSTIGIRGTIGYAPPEYAM GDRVCKEGDVYSYGILILEMFTGKRPTDEMFKDGMNLRDLVREATPAGRILSVLDPSMGVPVAAAGDGRSEVEEMELTESGRECLSCVLETAVNCAAELC KERMKMGDVARKLISARDVFIASTSAPMRMPERG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10033330 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Lus10033329 [exp]	1.0	0.9788
AT5G48060			C2 calcium/lipid-binding plant...		Lus10015709 [exp]	4.9	0.9534
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10015018 [exp]	8.4	0.9549
AT2G33793			unknown protein		Lus10011183 [exp]	11.7	0.9442
					Lus10006284 [exp]	11.8	0.9455
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10027931 [exp]	14.5	0.9481
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10014587 [exp]	18.2	0.9380
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	19.1	0.9511
					Lus10043397 [exp]	20.0	0.9408
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10016369 [exp]	20.6	0.9476

Compare expression of checked genes

Lus10033330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.