Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56090 619 / 0 COX15 cytochrome c oxidase 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034789 [exp] 774 / 0 AT5G56090 647 / 0.0 cytochrome c oxidase 15 (.1) Lus10034065 [exp] 553 / 0 AT5G56090 527 / 0.0 cytochrome c oxidase 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G166800 [exp] 644 / 0 AT5G56090 667 / 0.0 cytochrome c oxidase 15 (.1) Potri.001G469701 [exp] 416 / 3e-145 AT5G56090 430 / 9e-151 cytochrome c oxidase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [flax] [poplar] 2heme_cytochrom PF02628 [flax] [poplar] COX15-CtaA Cytochrome oxidase assembly protein
Representative CDS sequence Show only first row Show all	>Lus10033332 pacid=23172184 polypeptide=Lus10033332 locus=Lus10033332.g ID=Lus10033332.BGIv1.0 annot-version=v1.0 ATGTCCTCTGTTCTAAAGAGGAACAAACAGACAATCCACACCACAATCTACAATATCCGACGGAATCCTCCTCCTTCACCGCCTCCTTTCACCCGGTACA TCAGTGAACAGCCTTCTTTACCGGCTAGGTCCTTCTTCCACACCTTTCGATCTCTCCTCCCTAAGGCCGGCAATGTGAAATCAACGAGGAATATTTCAAC TGTGGCGTCGTCTGCTGTGGTGGAGAGTAAGGAAGGAGTGAGGCAGTTGCTGGTAACAGCAGGGCCTCGTGCTCAGAAGATGGTTGGGATTTGGCTGTTT GGATCAGCTGCTTGGGTTTTCAGTATGGTGATTCTCGGTGGTGTCACTAGGCTCACCCGTTCTGGACTTTCCATGACTGATTGGAAATTCACCGGTCAAC TCCCTCCTCTTTCCGATGAGGAGTGGGCCAAGGAGTTTGAGAAGTACAAGGAATCGCCTGAATACAAACGTGTGAACAAAGGGATGAGCCTTGATGATTT CAAATTTATATATTGGATGGAATATGGTCATCGTATGTGGGGAAGGGCCCTTGGGCTGATGTTTGCTCTCCCATTTTCGTATTTCATGCGTAAGGGATAT ATAACAGTGCAACTCGGACTGAGACTGTGTGGTCTCTTTGCTCTTGGTGCTGGGCAGGGTATGATTGGTTGGTGGATGGTCAAAAGTGGTCTAGAGGAGC CAGCTTCTGAATACGTAGAGCCAAGAGTTAGTCCTTACCGTCTAGCAGCTCATCTTACTTCAGCATTTGCTATTTATACTGGCCTTTTCTGGACTGCACT TTCTGTTGTGATGCCTGAACCGCCTGCAGAATCAGTTACTTGGGTCCGTGGGGCAGCCAAAGTGAAGAGACTCGCTCTTCCTGTAAGCCTTATTGTTGGT ATTACTGCCATCTCAGGAGCTTTTGTGGCTGGCAATGATGCTGGACGCGCATATAACACCTTCCCCAAAATGGGTGAAAACTGGATCCCTGATGGCATAT TGGAGATGAAGCCATTAATTCGAAACTTCTTTGAGAATACAGCAACAGTTCAGCTCGATCATCGTATACTTGCAACGACGACTTTAGCTTCAATTGCGGC GATGTGGTGGTTCACGAGAAAGATAGATGTACACCCTGCTGTAAGATCTTTGATTGGCAGCACGGTTGGCATGGCTATTCTTCAGGTAAGTTTAGGAATA TCAACGCTTCTGTCGTACGTACCTGTTTCACTTGGCACAGCACATCAAGCTGGAGCGCTAACACTTTTAACAACTATGATGCTGCTCAATCACACGGTGC GAAAGCCTTCGTTGCCCCTTCTCAAGTCATTACCTCAAGTTGCAAAGCCACTATTTTGA
AA sequence Show only first row Show all	>Lus10033332 pacid=23172184 polypeptide=Lus10033332 locus=Lus10033332.g ID=Lus10033332.BGIv1.0 annot-version=v1.0 MSSVLKRNKQTIHTTIYNIRRNPPPSPPPFTRYISEQPSLPARSFFHTFRSLLPKAGNVKSTRNISTVASSAVVESKEGVRQLLVTAGPRAQKMVGIWLF GSAAWVFSMVILGGVTRLTRSGLSMTDWKFTGQLPPLSDEEWAKEFEKYKESPEYKRVNKGMSLDDFKFIYWMEYGHRMWGRALGLMFALPFSYFMRKGY ITVQLGLRLCGLFALGAGQGMIGWWMVKSGLEEPASEYVEPRVSPYRLAAHLTSAFAIYTGLFWTALSVVMPEPPAESVTWVRGAAKVKRLALPVSLIVG ITAISGAFVAGNDAGRAYNTFPKMGENWIPDGILEMKPLIRNFFENTATVQLDHRILATTTLASIAAMWWFTRKIDVHPAVRSLIGSTVGMAILQVSLGI STLLSYVPVSLGTAHQAGALTLLTTMMLLNHTVRKPSLPLLKSLPQVAKPLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56090		COX15	cytochrome c oxidase 15 (.1)		Lus10033332 [exp]	0	1
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10030542 [exp]	4.0	0.8783
					Lus10013718 [exp]	5.3	0.8502
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10012890 [exp]	6.3	0.8516
AT2G31060		EMB2785	EMBRYO DEFECTIVE 2785, elongat...		Lus10039896 [exp]	8.4	0.8299
AT1G16870			mitochondrial 28S ribosomal pr...		Lus10020429 [exp]	11.4	0.8512
AT2G45030			Translation elongation factor ...		Lus10018604 [exp]	13.1	0.8303
AT4G11160			Translation initiation factor ...		Lus10033933 [exp]	13.4	0.8280
AT1G16280		SWA3, AtRH36	SLOW WALKER 3, Arabidopsis tha...		Lus10006326 [exp]	15.5	0.8129
AT1G04910			O-fucosyltransferase family pr...		Lus10032603 [exp]	15.9	0.8274
AT2G20390			unknown protein		Lus10022869 [exp]	16.5	0.7929

Compare expression of checked genes

Lus10033332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.