Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78980 721 / 0 SRF5 STRUBBELIG-receptor family 5 (.1) AT3G13065 635 / 0 SRF4 STRUBBELIG-receptor family 4 (.1) AT4G22130 531 / 0 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT1G53730 391 / 3e-126 SRF6 STRUBBELIG-receptor family 6 (.1.2) AT3G14350 379 / 5e-122 SRF7 STRUBBELIG-receptor family 7 (.1.2.3) AT4G03390 307 / 1e-93 SRF3 STRUBBELIG-receptor family 3 (.1) AT2G20850 295 / 4e-89 SRF1 STRUBBELIG-receptor family 1 (.1) AT1G11130 281 / 6e-84 SRF9, SCM, SUB STRUBBELIG-RECEPTOR FAMILY 9, SCRAMBLED, Leucine-rich repeat protein kinase family protein (.1) AT3G59350 248 / 1e-75 Protein kinase superfamily protein (.1.2.3) AT3G58690 241 / 7e-73 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034790 [exp] 1129 / 0 AT1G78980 768 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10035703 [exp] 895 / 0 AT1G78980 746 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10037294 [exp] 647 / 0 AT1G78980 525 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10003926 [exp] 434 / 9e-143 AT1G53730 885 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10037464 [exp] 426 / 2e-140 AT1G53730 824 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10015549 [exp] 375 / 6e-118 AT4G22130 972 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10020030 [exp] 348 / 9e-110 AT4G22130 947 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10018459 [exp] 312 / 2e-96 AT4G03390 594 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10039795 [exp] 305 / 5e-93 AT4G03390 892 / 0.0 STRUBBELIG-receptor family 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G001200 [exp] 817 / 0 AT1G78980 817 / 0.0 STRUBBELIG-receptor family 5 (.1) Potri.007G002600 [exp] 790 / 0 AT1G78980 499 / 1e-168 STRUBBELIG-receptor family 5 (.1) Potri.011G010500 [exp] 552 / 0 AT4G22130 916 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.001G161600 [exp] 421 / 1e-137 AT1G53730 590 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.003G073700 [exp] 410 / 1e-133 AT1G53730 575 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.004G005301 [exp] 371 / 1e-118 AT4G22130 906 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.019G103900 [exp] 313 / 1e-95 AT4G03390 801 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.013G144600 [exp] 304 / 2e-92 AT4G03390 783 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.011G045600 [exp] 303 / 2e-92 AT4G03390 617 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.004G037000 [exp] 303 / 3e-92 AT4G03390 645 / 0.0 STRUBBELIG-receptor family 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033333 pacid=23172074 polypeptide=Lus10033333 locus=Lus10033333.g ID=Lus10033333.BGIv1.0 annot-version=v1.0 ATGTACCCTGGTTTCCTAGGGACGACACTCCTGCTGGTCTTCTTCCTCGGGATTTGGATCCCTTTTGTCCATTCAAAGACCGATTCTCAGCATGTGGCTG CTCTGAATGTGATGTATACGAGCTTAAATTCTCCGTCCAAGTTAGATGGATGGAAGGCTAGCGGCGGCGATCCCTGTGGCGAGTCTTGGGATGGGATCAC CTGCGCAGGCTCCAAAGTTACTGAAATAAGGTTATCAGGGTTGGGACTGTCTGGAACTTTGGGCTACCAACTCTCAAACTTGAAATCTGTCACCTACTTT GACGTGAGTAAGAACAAACTGAAGCAGGAGGTTCCTTATCAGCTCCCTCCAAATGCAGTTTACATAGATCTATCCAAAAACCAGTTTACAGGGAATGTAC CTTTCTCAATCTCCCTCATGACTGACCTTGAGCATTTAGATGTTAGCAATAACAAGCTGAACGGGCAACTAACTGACATGTTTCAGAAACTTTCCAAGCT CAAAATCATGGATCTTTCGAACAACCAAATGTCAGGAGATCTGCCACAGAGCCTTTCATCTCTTAAAAGCTTGACTCAATTGTTCCTGCAGAACAATAAG TTTACAGGGAAGATCAATATGCTTGGAAACCTTCCTCTTCAAGAACTGAACGTCGCCAACAACAAGTTCACTGGTTGGATCCCTGCAAAGCTCGTCGACA TCAACAACTTAGTGACTGACGGGAATAAGTGGTCGAGAGGGGCTGCACCGCCGGGGATGAAACAAGCAGCGAATGCAAAGGGAGGAGGTGGGGGACCTAA GGTATCAACTGCTGTAATGATATCTCTGATAGTACTCGGAGTGGTCATCATCATTGTACTTCTCATCATCGTCTTCTTCTCGAGGAAGAAATCTTCTTCT TCCCCTTCTTCCTTCCTCGACGACGAAGAAAAGATGAGTCGTAAGGCTGTCACTCCTCTCGCCACTTCCCACGAGCTCTCCCGCGACCCTTACTCCCCTT TTCATCGCAACCCCATTAGAGAGTCGTTCGAATCGGCGGCCTCAGTTGACATTAAGAAGCTGCAGAAGGTTCCGCCGCCGACCGACTTTGCGCAGTCACT GAACGACAAGGAGTTCGCTACCCGCCTCAACTCCAAGAAAGACCCCGCCTCTGCTAAGGCTATATGTTACTCTTTGTCCGACTTGCAGACTGCCACCGCT GATTTCGCTCCGGGACGCCTTCTCGGCGAGGGAACTCTCGGCCGCGTCTACAGAGCCAAATACCCTGACGGCAAGGTGTTGGCTGTGAAGAAGATTGATT CGTCGAACTTCCACGAGGGGAAGGCAAGCGAGGAGTTCGCGGAGATAGTAAGCAGCATTTCGAAAATTCACCACCCAAACATTGTAGAACTAGTGGGTTC CTGTTCGGAGCAAGGGCACAACATGCTGGTGTACGACTACTACAGGAACGGATCACTTCATGACTTCCTTCACAATTCTGGGGATTTCAGTAACCCTTTG ACTTGGAACACCCGCGTCCGCATCGCTCTCGCCACTGCCAGGGCCGTCGAGCATCTACACGAAGCATGCTCTCCGTCTGTGATCCACAAGAACATCAAAT CGTCCAACATCTTACTCGACCTCGATCTCAATCCTCATCTTTGCGATTATGGCTTGGCCAACTTCCACACGAGGACAAGCCAGAACTTAGGAGTAGGTTA CAATGCCCCAGAGTGCACAATGCCGTCAAAATACACGATAAAGAGCGACATCTACAGCTTCGGAGTTGTCATGCTAGAGCTACTTACGGGCCGTATGCCT TACGATCAGTCGAAGCCGAAACCGGAACAAGCACTGGTGAGATGGGCGACCCCGCAGTTACATGACATAGATGCGGTGGAGAAGATGGTGGATCCAGCAC TCCGTGGCCTTTACCCTCCTAAATCGATCTCGAGGTTCGCTGATATAGTCGCCCTTTGCGTCCAGGTGGAATCTGGATTTCGGCCACCAATGTCGGAGGT GGTGCAGTCGTTAGTGACGTTGGTTCAACATTCGAACATGAACATGAAAGATGATCTTACTGCTTCTCGTCACGCCGAAGACATAAACTTTTAA
AA sequence Show only first row Show all	>Lus10033333 pacid=23172074 polypeptide=Lus10033333 locus=Lus10033333.g ID=Lus10033333.BGIv1.0 annot-version=v1.0 MYPGFLGTTLLLVFFLGIWIPFVHSKTDSQHVAALNVMYTSLNSPSKLDGWKASGGDPCGESWDGITCAGSKVTEIRLSGLGLSGTLGYQLSNLKSVTYF DVSKNKLKQEVPYQLPPNAVYIDLSKNQFTGNVPFSISLMTDLEHLDVSNNKLNGQLTDMFQKLSKLKIMDLSNNQMSGDLPQSLSSLKSLTQLFLQNNK FTGKINMLGNLPLQELNVANNKFTGWIPAKLVDINNLVTDGNKWSRGAAPPGMKQAANAKGGGGGPKVSTAVMISLIVLGVVIIIVLLIIVFFSRKKSSS SPSSFLDDEEKMSRKAVTPLATSHELSRDPYSPFHRNPIRESFESAASVDIKKLQKVPPPTDFAQSLNDKEFATRLNSKKDPASAKAICYSLSDLQTATA DFAPGRLLGEGTLGRVYRAKYPDGKVLAVKKIDSSNFHEGKASEEFAEIVSSISKIHHPNIVELVGSCSEQGHNMLVYDYYRNGSLHDFLHNSGDFSNPL TWNTRVRIALATARAVEHLHEACSPSVIHKNIKSSNILLDLDLNPHLCDYGLANFHTRTSQNLGVGYNAPECTMPSKYTIKSDIYSFGVVMLELLTGRMP YDQSKPKPEQALVRWATPQLHDIDAVEKMVDPALRGLYPPKSISRFADIVALCVQVESGFRPPMSEVVQSLVTLVQHSNMNMKDDLTASRHAEDINF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10033333 [exp]	0	1
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024572 [exp]	1.0	0.8726
					Lus10024691 [exp]	2.0	0.8347
AT4G31350			Core-2/I-branching beta-1,6-N-...		Lus10026959 [exp]	4.2	0.7377
AT5G57710			Double Clp-N motif-containing ...		Lus10008902 [exp]	4.8	0.7009
AT3G54510			Early-responsive to dehydratio...		Lus10043455 [exp]	4.9	0.7990
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10013562 [exp]	10.0	0.7861
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10021200 [exp]	10.2	0.7632
AT5G15100		ATPIN8, PIN8	PIN-FORMED 8, Auxin efflux car...		Lus10013422 [exp]	13.5	0.7566
AT3G51250			Senescence/dehydration-associa...		Lus10041892 [exp]	16.5	0.7191
AT4G39955			alpha/beta-Hydrolases superfam...		Lus10023147 [exp]	27.7	0.6648

Compare expression of checked genes

Lus10033333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.