Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55960 381 / 9e-131 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT3G13062 368 / 2e-125 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) AT5G54170 138 / 1e-36 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT4G14500 128 / 5e-33 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) AT1G64720 125 / 2e-32 CP5 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT3G23080 116 / 6e-29 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034791 [exp] 558 / 0 AT3G13062 346 / 2e-115 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) Lus10033247 [exp] 130 / 7e-34 AT1G64720 523 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10032938 [exp] 127 / 2e-32 AT1G64720 437 / 2e-152 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10041166 [exp] 119 / 1e-29 AT4G14500 607 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10021883 [exp] 115 / 3e-28 AT4G14500 605 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10008281 [exp] 95 / 3e-22 AT1G64720 374 / 1e-130 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G001100 [exp] 404 / 1e-139 AT3G13062 416 / 3e-144 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) Potri.007G002700 [exp] 385 / 3e-132 AT3G13062 390 / 5e-134 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) Potri.001G450100 [exp] 130 / 1e-33 AT1G64720 489 / 6e-173 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.011G151500 [exp] 126 / 3e-32 AT1G64720 515 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.015G005000 [exp] 123 / 5e-31 AT1G64720 474 / 1e-166 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.012G021400 [exp] 123 / 5e-31 AT1G64720 478 / 2e-168 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.010G076500 [exp] 119 / 1e-29 AT4G14500 571 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.008G162600 [exp] 114 / 5e-28 AT4G14500 581 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain
Representative CDS sequence Show only first row Show all	>Lus10033334 pacid=23172166 polypeptide=Lus10033334 locus=Lus10033334.g ID=Lus10033334.BGIv1.0 annot-version=v1.0 ATGGCGATTCTTCAGCATCTCCACTCTCTGCATCACGGATTCCAATCTCTCCTCCTGAATCGCGCTTCCGATTCCCCGACCTGGTTTCCCGACTTCGGCT ATGGCTCCGCTATTCTCCTTTCCCTTCTCCTTATCCTCCTCCTCCACTTCTCCCAGCGCCTCCTCCTCTCCGTCTTCTCTTCTCCTTCTTCTCAATCTTC TCCTCTTTCTGCCACCGCTGCCGTTGCTGCTCCTCCTGCTTCTATGGCTTCTAACCCTGAATTCAGTTCTTCGTCGGAGCTGGTTTCGGAAGCGGATTTG AACTTCTTGGTTAAAAATCTGGATGAGGTTGATCAGAGCGAGAGCTGGGAACCTGTTGTTGATAAGAGAAACGATCTCTTACATTATACAGCGAAATACT GCAAACCCAAGAATGGACCTATTACGTACTTGAGTGTGACGGTTTTCGAGAACTGCTCCCCTGAGTTGCTTAGGGACTTCTACATGGATAACAATTACAG AAAGCAGTGGGACAAAACTGTGGTTGAATATGAGCAACTCCAAGTGGATAGATCTAATGGAACTGAAATTGGCCGCACTATTAAGAAGTTCCCACTTTTG ACACCTAGGGAGTACATACTGGCGTGGAGATTGTGGGAAGGAAAGGATAAAACATTCTACTGTTTCATTAAGGAATGTGAACATCAGACAGCACCATTGG GGAAAAAGTATGTGCGAGTCAGACACTTCAGATCTGTTCCTGGTAGAGATGCTTGTGAGATAAAAATGTATCACCAAGAAGATGCTGGTCTAAATGTGGA GATGGCAAAATTGGCTTTTGCGAGGGGCATATGGAGCTACGTTTGCAAAATGCATACAGCACTGTGCAAGTACTCGCTAAGTAATCAACTTGGAATGGAC CCTATTTCCGCCCTCACTCTGGTTCAGAAGGTTCCCCTTGGAATTGAAACAACAGATAGTGTCAATGGCACACCAGAGAATCCTACTGCTCTTGTATCAA CCAGTGTGACCGGGAGTCGAAAGAAGAGACTAGAGAAGAGGCCATCACGAAAAGCAGTGACAAATGGGTTGCTGCTAATTGGAGGGGTCATCTGCCTCTC CCGTGGTAACTGTAGCCTGGGGGCGAAAGTTGCTATGGGTTACCTCTTGACGAAGCTTGGGAAACGAAATGCTAAGCAATCCCTTGAGAGGTAG
AA sequence Show only first row Show all	>Lus10033334 pacid=23172166 polypeptide=Lus10033334 locus=Lus10033334.g ID=Lus10033334.BGIv1.0 annot-version=v1.0 MAILQHLHSLHHGFQSLLLNRASDSPTWFPDFGYGSAILLSLLLILLLHFSQRLLLSVFSSPSSQSSPLSATAAVAAPPASMASNPEFSSSSELVSEADL NFLVKNLDEVDQSESWEPVVDKRNDLLHYTAKYCKPKNGPITYLSVTVFENCSPELLRDFYMDNNYRKQWDKTVVEYEQLQVDRSNGTEIGRTIKKFPLL TPREYILAWRLWEGKDKTFYCFIKECEHQTAPLGKKYVRVRHFRSVPGRDACEIKMYHQEDAGLNVEMAKLAFARGIWSYVCKMHTALCKYSLSNQLGMD PISALTLVQKVPLGIETTDSVNGTPENPTALVSTSVTGSRKKRLEKRPSRKAVTNGLLLIGGVICLSRGNCSLGAKVAMGYLLTKLGKRNAKQSLER

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55960			Polyketide cyclase/dehydrase a...		Lus10033334 [exp]	0	1
AT4G11570			Haloacid dehalogenase-like hyd...		Lus10002002 [exp]	1.4	0.9110
AT2G36680			Modifier of rudimentary (Mod(r...		Lus10014395 [exp]	2.0	0.9092
AT1G06400		ARA2, AtRABA1a,...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10029789 [exp]	4.6	0.8931
AT1G69450			Early-responsive to dehydratio...		Lus10037139 [exp]	4.9	0.8941
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10013374 [exp]	5.3	0.8960
AT2G38610			RNA-binding KH domain-containi...		Lus10034443 [exp]	7.3	0.8899
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10018310 [exp]	10.8	0.9011
AT5G62610	bHLH	bHLH079	basic helix-loop-helix (bHLH) ...		Lus10036659 [exp]	12.2	0.8880
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10017462 [exp]	12.4	0.8956
AT4G29960			unknown protein		Lus10001629 [exp]	12.6	0.8921

Compare expression of checked genes

Lus10033334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.