Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13060 547 / 0 ECT5 evolutionarily conserved C-terminal region 5 (.1.2) AT1G55500 295 / 6e-92 ECT4 evolutionarily conserved C-terminal region 4 (.1.2.3) AT1G27960 287 / 4e-89 ECT9 evolutionarily conserved C-terminal region 9 (.1) AT3G13460 290 / 7e-89 ECT2 evolutionarily conserved C-terminal region 2 (.1.2.3.4) AT5G61020 285 / 9e-89 ECT3 evolutionarily conserved C-terminal region 3 (.1.2) AT5G58190 283 / 2e-87 ECT10 evolutionarily conserved C-terminal region 10 (.1.2) AT3G17330 276 / 2e-85 ECT6 evolutionarily conserved C-terminal region 6 (.1.2) AT1G79270 264 / 3e-80 ECT8 evolutionarily conserved C-terminal region 8 (.1) AT1G48110 265 / 1e-79 ECT7 evolutionarily conserved C-terminal region 7 (.1.2) AT3G03950 252 / 6e-77 ECT1 evolutionarily conserved C-terminal region 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034792 [exp] 1102 / 0 AT3G13060 646 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10037028 [exp] 358 / 1e-115 AT3G13060 415 / 6e-138 evolutionarily conserved C-terminal region 5 (.1.2) Lus10015778 [exp] 318 / 3e-103 AT3G13060 360 / 5e-120 evolutionarily conserved C-terminal region 5 (.1.2) Lus10027582 [exp] 323 / 4e-102 AT5G58190 417 / 6e-140 evolutionarily conserved C-terminal region 10 (.1.2) Lus10002624 [exp] 285 / 8e-88 AT3G13460 449 / 8e-151 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10020269 [exp] 283 / 1e-85 AT3G13460 443 / 8e-147 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10017111 [exp] 281 / 1e-84 AT1G48110 597 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10018343 [exp] 275 / 4e-83 AT1G48110 592 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10037364 [exp] 257 / 4e-77 AT1G09810 345 / 3e-113 evolutionarily conserved C-terminal region 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G002800 [exp] 764 / 0 AT3G13060 732 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.014G001000 [exp] 738 / 0 AT3G13060 756 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.001G056100 [exp] 400 / 3e-132 AT3G13060 431 / 5e-144 evolutionarily conserved C-terminal region 5 (.1.2) Potri.018G149800 [exp] 369 / 3e-119 AT5G58190 417 / 3e-139 evolutionarily conserved C-terminal region 10 (.1.2) Potri.006G079900 [exp] 354 / 1e-113 AT5G58190 420 / 1e-140 evolutionarily conserved C-terminal region 10 (.1.2) Potri.001G002000 [exp] 298 / 3e-92 AT3G13460 546 / 0.0 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.003G222700 [exp] 293 / 1e-90 AT3G13460 520 / 4e-178 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.019G034300 [exp] 281 / 2e-86 AT3G13460 412 / 9e-137 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.010G152300 [exp] 285 / 9e-86 AT1G48110 572 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Potri.010G175500 [exp] 280 / 2e-85 AT1G79270 418 / 2e-140 evolutionarily conserved C-terminal region 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF04146 [flax] [poplar] YTH YT521-B-like domain
Representative CDS sequence Show only first row Show all	>Lus10033335 pacid=23172083 polypeptide=Lus10033335 locus=Lus10033335.g ID=Lus10033335.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCCCAATCACCATCACCCGATCTCTCTACGGACTCTTCTGGGTCACTGAGCATATTGATCATGGATGCAGAAGAGAAACTTCTTCAACCAG ACAACATGAAGGACAGGGATGCTGTTACTATAGGTCATCCAACGCATGGCGCTCAGTTCGGTTCTTTTGGCCCAAGTGGAGATCAAGCAGTCTATCCTCC GAATATTTATTCCCCTCAGCCACAAGCTTTCTACTACAGAGGTTATGACAATGGAAGTGGCGAGTGGGATGAATATTCTCCCTATATCAATGCTGAAGGA TTGGACTTGGGATCTGGAGGCATCTATAATGAGAATCCATCTCTTGTCTTTCATGGTGGATATGGGTACGGGCCACAAATTCCATACGGGCCATATTCTC CCGTGACTCCACCTTTGCCTTCTGTAGGTGGAGATGCACAGTTTTACCCTCCGCAACAAGTCCAATTTTCTGGGCCCCCATATTACCAGCAGCTTGGTCC TCCTAATATGCCATATGTGTCTCCCCACACACCAGTCTCACAGCCTGAATTCAATGCCTTGCCAGCTATTGATCAACATGGTGAGAACATGCTGTCTAGA CCAAGACCTTCATACCCTCTTCCCTCGGGATCTTTTGGTAGAGGCAATGCTCCAGGAAATCTTGGTGGTCTTGGTTTCCATGAGGTGTTTGATGGATCAA GGTCTGGAGGAATATGGTCCGATTACGCTAGGCCTTCTGACAGGCATAGGCCTTTGACTCCCTACTCTCCTGCAGTATCCCCACAACCAACCCCTCCATT TGGATCATTTGGGCAGAATATGGGAATGGCACCTCAGCAACAGAGGTCCATGTACGGCTTTGGCTCTGGTTCGAGTTCCTTTGGTAGAGGCTATACGCAT GGTGTTTTCAATCAAGGACCCAGCTTTGGCAATGCTTCTGTTAAGGGCGTGGGGACGAACAGTCGCGGTTGGCTTTCCTTTGATAACAATAAATTGCGTG GAAATGGCAGTGTTCCTCTGTGTGGCTGTAACGGAAACCTTGATATCCTGAATGAACAAAACCGAGGACCAAGGGCTTCAAAGCCTAAGAATCAAAACAC TACTGACCATGCTGGTGCTTCGGTTGAGAGCACCAAATGTAGCAAATCTCCCCAACAGATCAATGAGGACTCGTACAATCGACCTGATTTTGTCACTGAA CACAAGGAAGCTAAGTTCTTCATTATCAAATCATACAGTGAAGATAATGTCCACAAGAGCATTAAATATGGTATTTGGGCTAGCACACCCAATGGGAACA AAAAATTGGATGCTGCTTATGCTGACGCCAAGACAAAAGAAGATCCATGCCCAGTGTTCCTCTTATTTTCAGTTAATGCGAGTGCTCAGTTTTGTGGAGT TGCTGAAATGACAGGACCGGTCAATTTCGAGAAGAGCGTGGATTACTGGCAGCAGGATAAATGGAGTGGGCAGTTTCCTGTCAAGTGGCACATGATTAAG GATGTTCCCAACAGTCAGTTCCGCCATATAGTTCTGGAAAATAATGATAATAAGCCCGTCACTAATAGTCGAGACACACAAGAGGTTAAACTGGAGCAAG GACTCGAGATGTTGAGCATATTTAAGAACTACGAGACAGATATGTCCATCCTAGACGACTTTGAATTTTACGAAGACAGACAGAAAGCCATGCAAGAAAG GAAAGCCAGACAGCAGCAGCAGCATCAAGTGGCTGCAATTCATGACAGCGTTGCTCCAGAAAAAGAGAGCAGCAATGCAGCAAACCTTCCAGGTAGTTTC CTGAAGCAGATGTCCAAGAGCTTTGCTCAGGTGGTGCGCTTAGACGACAATGCTACTAAAGAAGGTGTCTCAGATGGTTCCGTGGGTGCCACCGTAGAAG AAGCTACAACGATGGCGACACCCGTCTCCATTTCTCCGACTACCATTGGCGGATAG
AA sequence Show only first row Show all	>Lus10033335 pacid=23172083 polypeptide=Lus10033335 locus=Lus10033335.g ID=Lus10033335.BGIv1.0 annot-version=v1.0 MAAAQSPSPDLSTDSSGSLSILIMDAEEKLLQPDNMKDRDAVTIGHPTHGAQFGSFGPSGDQAVYPPNIYSPQPQAFYYRGYDNGSGEWDEYSPYINAEG LDLGSGGIYNENPSLVFHGGYGYGPQIPYGPYSPVTPPLPSVGGDAQFYPPQQVQFSGPPYYQQLGPPNMPYVSPHTPVSQPEFNALPAIDQHGENMLSR PRPSYPLPSGSFGRGNAPGNLGGLGFHEVFDGSRSGGIWSDYARPSDRHRPLTPYSPAVSPQPTPPFGSFGQNMGMAPQQQRSMYGFGSGSSSFGRGYTH GVFNQGPSFGNASVKGVGTNSRGWLSFDNNKLRGNGSVPLCGCNGNLDILNEQNRGPRASKPKNQNTTDHAGASVESTKCSKSPQQINEDSYNRPDFVTE HKEAKFFIIKSYSEDNVHKSIKYGIWASTPNGNKKLDAAYADAKTKEDPCPVFLLFSVNASAQFCGVAEMTGPVNFEKSVDYWQQDKWSGQFPVKWHMIK DVPNSQFRHIVLENNDNKPVTNSRDTQEVKLEQGLEMLSIFKNYETDMSILDDFEFYEDRQKAMQERKARQQQQHQVAAIHDSVAPEKESSNAANLPGSF LKQMSKSFAQVVRLDDNATKEGVSDGSVGATVEEATTMATPVSISPTTIGG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10033335 [exp]	0	1
AT5G14720			Protein kinase superfamily pro...		Lus10032144 [exp]	1.4	0.8970
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10027496 [exp]	1.4	0.8980
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10002454 [exp]	2.4	0.8744
AT1G10390			Nucleoporin autopeptidase (.1....		Lus10008288 [exp]	3.5	0.8617
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Lus10038095 [exp]	5.1	0.8376
AT5G18190			Protein kinase family protein ...		Lus10011091 [exp]	6.0	0.8644
AT1G05960			ARM repeat superfamily protein...		Lus10001161 [exp]	6.5	0.8556
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10039250 [exp]	7.3	0.8516
AT3G06330			RING/U-box superfamily protein...		Lus10033985 [exp]	8.3	0.8182
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10034792 [exp]	8.7	0.8620

Compare expression of checked genes

Lus10033335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.