Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13050 444 / 1e-152 AtNiaP nicotinate transporter, Major facilitator superfamily protein (.1) AT3G20660 114 / 3e-27 4-Oct, ATOCT4 organic cation/carnitine transporter4 (.1) AT2G18480 87 / 5e-18 AtPLT3 Major facilitator superfamily protein (.1) AT2G16130 87 / 6e-18 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT2G16120 84 / 3e-17 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT1G73220 82 / 2e-16 1-Oct, ATOCT1 organic cation/carnitine transporter1 (.1) AT5G16150 78 / 5e-15 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT2G35740 76 / 2e-14 ATINT3 nositol transporter 3 (.1) AT4G36670 74 / 6e-14 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT1G79820 73 / 1e-13 SGB1 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033337 [exp] 612 / 0 AT3G13050 508 / 2e-177 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10043061 [exp] 572 / 0 AT3G13050 522 / 1e-176 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10035704 [exp] 537 / 0 AT3G13050 378 / 1e-127 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10037295 [exp] 518 / 0 AT3G13050 363 / 1e-121 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10027577 [exp] 437 / 4e-149 AT3G13050 504 / 1e-175 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10008555 [exp] 434 / 4e-148 AT3G13050 499 / 7e-174 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10018992 [exp] 383 / 3e-128 AT3G13050 464 / 2e-160 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10027576 [exp] 230 / 3e-71 AT3G13050 293 / 6e-96 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10013330 [exp] 114 / 5e-27 AT3G20660 611 / 0.0 organic cation/carnitine transporter4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G003100 [exp] 561 / 0 AT3G13050 555 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.007G003000 [exp] 545 / 0 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.014G000800 [exp] 542 / 0 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.018G150700 [exp] 438 / 5e-150 AT3G13050 482 / 3e-167 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.018G151700 [exp] 277 / 2e-85 AT3G13050 294 / 2e-91 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.011G130533 [exp] 110 / 2e-25 AT3G20660 708 / 0.0 organic cation/carnitine transporter4 (.1) Potri.004G152300 [exp] 90 / 5e-19 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 90 / 5e-19 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.009G113600 [exp] 90 / 8e-19 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.010G174400 [exp] 87 / 7e-18 AT1G16390 627 / 0.0 organic cation/carnitine transporter 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10033336 pacid=23172189 polypeptide=Lus10033336 locus=Lus10033336.g ID=Lus10033336.BGIv1.0 annot-version=v1.0 ATGAAGGTTGATCAGGCAGTTGGAGGAGGTTACAGTGTGGATGGAGCAATTATGTCAATGGGGTTTGGAACTTTCCAAACCCTCATGTGCTTATACGCTG GGTTGGCTTGGATTGCAGAGGCAATGGAGATGATGATCCTGTCCTTCATCGGCCCAGCCGTTAAGCTTGAGTGGAATCTAAGTGCTGATCAGGAGACCTT TGTTACCGTTGTGGTCTTTGCTGGCATGCTTGTTGGTTCTTACGTCTGGGGTCTCCTCTCTGACAAATTGGGCAGGAGGAGAGGGTTTTTGTTCACGGCA GTAGTTACTGCCTTAGCCGGACTTTTCAGCGCGTTCGCGTGGAATTATGTGGCGTTGTTGGTTGCTCGCTGCATCGTAGGGGTCGGTCTTGGAGGTGCAC CGGTAGTCTTCACTTGGTTCCTTGAGTTCGTCCCAGCACCTAACAGAGGCAAATGGATGGTTGCTTTCAACATTTTCTGGACTATTGGTGCTATTCTTCA AGTCTCAATTGCTTGGGTTGTGATGCCAAATTTAGGATGGAAGTGGCTAGTGGGTCTGTCTGCAACCCCATCGTTTCTCCTTCTTGTGTTCTACTACTGG ACGCCTGAGTCTCCAAGGTACCTATGCCTAAAAGGCAGAAAAGATGAAGCTATTAAGGTCATGGAAACAGTAGCAAAAATCAACAAGAAAAGCCTGCCTC CTGGTGTTTTACTTACCGACCACGAAATCGAGCTCCAAGCACAACAACAACAAGCTTTATCGCCCAATTCCGATCCCCCGAAATGGGAAGATTCCAACTT GGGACCTTGGAAGACGATCCGGCTTCTCTTGTCTCACAAGCTAGCCCGATCCACAGTGATGTTGTGGTTCATATTCTTCGGAAATGCTTTTTCCTACTAC GGCATTGTTCTGCTGACCACTCAGTTGAATCGCAGTAACTTGTGCAGCAAGTCACCCACGTCTGAAGGGTCTGGTGCTGGTATTAAGTACAAGAACGTTT TCATTGCTACTCTAGCAGAGTGTCCAGGACTCGTAGTGGCATTTCTGTTAGTCGACAGAATTGGTCGCAAATTTTCCATGGCATCGATGCTATTCATCTG CTGTGTCTTCGTCCTCCCATTAGTTGTTCACCAACCTCCACTCGTGACGACAATCCTTCTGTTCGGAGCTCGTATCTGCATCACCGGATCGTTTGCAATT GCCTTCGTACTAGCTCCAGAGCTATACCCAACATCAGTGCGGTCAACTGGGTTCGGGCTAGCGAGCTCGATGGGAAGAATCGGTGGGATGACAGCTCCGT TTGTGGCTGTAAGCTTGACTGAGAGATGCCAACAGCGGCTTGCGGTAGTGGTGTTCGTGGGTATAGTGGCAATAGCATTGGTAGCTACGATGTTGATACC TTACGAGACTCAGGGGATTGAGCTGATTGAGAGCATCAAAAGCACCAAGAATGAAGCACTCAGGGACAGTAAGCGTCATGAAGAAGAAGCATGA
AA sequence Show only first row Show all	>Lus10033336 pacid=23172189 polypeptide=Lus10033336 locus=Lus10033336.g ID=Lus10033336.BGIv1.0 annot-version=v1.0 MKVDQAVGGGYSVDGAIMSMGFGTFQTLMCLYAGLAWIAEAMEMMILSFIGPAVKLEWNLSADQETFVTVVVFAGMLVGSYVWGLLSDKLGRRRGFLFTA VVTALAGLFSAFAWNYVALLVARCIVGVGLGGAPVVFTWFLEFVPAPNRGKWMVAFNIFWTIGAILQVSIAWVVMPNLGWKWLVGLSATPSFLLLVFYYW TPESPRYLCLKGRKDEAIKVMETVAKINKKSLPPGVLLTDHEIELQAQQQQALSPNSDPPKWEDSNLGPWKTIRLLLSHKLARSTVMLWFIFFGNAFSYY GIVLLTTQLNRSNLCSKSPTSEGSGAGIKYKNVFIATLAECPGLVVAFLLVDRIGRKFSMASMLFICCVFVLPLVVHQPPLVTTILLFGARICITGSFAI AFVLAPELYPTSVRSTGFGLASSMGRIGGMTAPFVAVSLTERCQQRLAVVVFVGIVAIALVATMLIPYETQGIELIESIKSTKNEALRDSKRHEEEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10033336 [exp]	0	1
AT4G24000		ATCSLG2	ARABIDOPSIS THALIANA CELLULOSE...		Lus10032416 [exp]	1.4	0.9387
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10007777 [exp]	1.4	0.9285
AT3G50770		CML41	calmodulin-like 41 (.1)		Lus10032734 [exp]	1.7	0.9226
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10024360 [exp]	5.0	0.8778
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10032415 [exp]	8.1	0.9071
AT1G80320			2-oxoglutarate (2OG) and Fe(II...		Lus10041279 [exp]	11.7	0.8713
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10010874 [exp]	12.0	0.8822
AT4G35160			O-methyltransferase family pro...		Lus10013945 [exp]	20.0	0.8988
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10003449 [exp]	20.6	0.8824
AT1G78780			pathogenesis-related family pr...		Lus10028620 [exp]	20.6	0.8503

Compare expression of checked genes

Lus10033336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.