Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13050 508 / 9e-178 AtNiaP nicotinate transporter, Major facilitator superfamily protein (.1) AT3G20660 104 / 8e-24 4-Oct, ATOCT4 organic cation/carnitine transporter4 (.1) AT2G16130 84 / 6e-17 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT2G16120 81 / 5e-16 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT1G73220 67 / 2e-11 1-Oct, ATOCT1 organic cation/carnitine transporter1 (.1) AT1G20860 64 / 1e-10 PHT1;8 phosphate transporter 1;8 (.1) AT1G16390 61 / 9e-10 3-Oct, ATOCT3 organic cation/carnitine transporter 3 (.1) AT2G18480 61 / 1e-09 AtPLT3 Major facilitator superfamily protein (.1) AT3G18830 61 / 2e-09 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT1G79360 60 / 3e-09 2-Oct, ATOCT2 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043061 [exp] 723 / 0 AT3G13050 522 / 1e-176 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10033336 [exp] 660 / 0 AT3G13050 485 / 2e-168 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10027577 [exp] 510 / 5e-178 AT3G13050 504 / 1e-175 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10035704 [exp] 501 / 8e-176 AT3G13050 378 / 1e-127 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10008555 [exp] 499 / 6e-174 AT3G13050 499 / 7e-174 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10037295 [exp] 491 / 1e-171 AT3G13050 363 / 1e-121 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10018992 [exp] 449 / 3e-154 AT3G13050 464 / 2e-160 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10027576 [exp] 300 / 3e-98 AT3G13050 293 / 6e-96 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10013330 [exp] 112 / 2e-26 AT3G20660 611 / 0.0 organic cation/carnitine transporter4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G003100 [exp] 633 / 0 AT3G13050 555 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.014G000800 [exp] 612 / 0 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.007G003000 [exp] 597 / 0 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.018G150700 [exp] 477 / 4e-165 AT3G13050 482 / 3e-167 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.018G151700 [exp] 320 / 1e-101 AT3G13050 294 / 2e-91 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.011G130533 [exp] 115 / 3e-27 AT3G20660 708 / 0.0 organic cation/carnitine transporter4 (.1) Potri.004G151725 [exp] 88 / 3e-18 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 81 / 5e-16 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.010G174400 [exp] 79 / 2e-15 AT1G16390 627 / 0.0 organic cation/carnitine transporter 3 (.1) Potri.009G113600 [exp] 74 / 7e-14 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10033337 pacid=23172195 polypeptide=Lus10033337 locus=Lus10033337.g ID=Lus10033337.BGIv1.0 annot-version=v1.0 ATGGCAAATCTTAATGCAGGTTACACTGTGGATGAAGCTCTCATTTCCGTGGGGTTTGGAAAGTTCCAGATCCTTGTTTGCCTTTATGCTGGTATGGGGT GGCTTTCGGAGGCTATGGAGATGATGATTCTCTCATTTATAGGCCCAGCTGTAAAAGCTAAGTGGAATCTATCTGCCAATCAAGAGACTTTGTTAAGTGT AGTGGTGTTTGCTGGTATGCTGGTTGGTGCATATTCATGGGGTGCTGTTTCTGACAAACTGGGACGAAGGAACGGATTTTTTGTCACAGCATTAGTGACT TCTGCAGCAGGTCTATTTAGTTCCTTCGCTTGGAACTTTGTTGTGCTGCTAATTTCTCGTTGTTTGGTTGGCCTTGGACTTGGAGGTGGACCTGTACTCT TTGCCTGGTTCTTGGAGTTCGTTCCTGTGACAAATAGAGGCATGTGGATGATTATTTTCTATGCGTTCTGGACCGTTGGAACAATTTTTGAGGTTGTTCT AGCATGGATTGTTATGCCAAGATTGGGGTGGAGGTGGCTGGTTGGGCTTTCTGCTATTCCTTCGTTCAGTCTCCTTGTGTTGTATCCTCTGACACCCGAA TCACCAAGGTACCTGTGCTTGAAAGGTAGGAAGGATGACGCCCTTAGAATTATGGAGAAGATAGCAAAATTAAACAAGAAGGAGTTGCCTTCTGGTGTGC TTATAACCGATCATGAAAGGGAGCAACAAGGACAAATTGTTTCGCCAGAGTTCGCGGCCCCTGATGCATCGTCATCTACCCCTCCAAGGTGGAAAGATGC TGACATGGGTGCCATCAAGACTATAATGCTGCTTCTTTCTCGTAAATTGGCCCGTTCAACAGTACTCTTGTGGCTCATATTCTTCGGGAATGCATTTTCC TACTATGGCCTTGTTCTGTTAACTACCCAGTTGAATCGTCCTGATCGTTGCAACCCAAATACACCCAACTCTGAAAACAACTCGGACGGTGGAATTGACT ATAAGAATGTCTTCATAACCACTTTAGCAGAATGTCCAAGCCTCATCCTAGTGGGTGTTTTCGTCGATAGAATTGGTCGCAAAATTTCCATGGCTGGCCT GTTCTTCATTTGTATTGCGTTCGTGCTGCCATTGGTTGTCCATCAATCTCCACTTGTAACCACGATTCTTCTATTCGGAGCAAGAATCTGCATCACTGGA ACTTTTGCTGTTGCTTTTCTGATTGCTCCAGAGCTGTACCCAACATCAGTGAGGTCAACTGGGTTTGGACTTGCAAGCGCGATGGGAAGGATTGGTGGGA TGACATGTCCATTTGTGGCAGTAGGGTTGATGGAAGGATGCCATCAGCGTGAAGCACTGTTGCTGTTTGCTGCGGTGGTCGCAATAGGTTTAGTTTCGAC ATTGTTTCTTCCGTACGATACCATGGGCCGTGAATTGACGGAGAGCATAGCAAGTACGAAGTATGAAAAACAACATGAAGAGGCCTGA
AA sequence Show only first row Show all	>Lus10033337 pacid=23172195 polypeptide=Lus10033337 locus=Lus10033337.g ID=Lus10033337.BGIv1.0 annot-version=v1.0 MANLNAGYTVDEALISVGFGKFQILVCLYAGMGWLSEAMEMMILSFIGPAVKAKWNLSANQETLLSVVVFAGMLVGAYSWGAVSDKLGRRNGFFVTALVT SAAGLFSSFAWNFVVLLISRCLVGLGLGGGPVLFAWFLEFVPVTNRGMWMIIFYAFWTVGTIFEVVLAWIVMPRLGWRWLVGLSAIPSFSLLVLYPLTPE SPRYLCLKGRKDDALRIMEKIAKLNKKELPSGVLITDHEREQQGQIVSPEFAAPDASSSTPPRWKDADMGAIKTIMLLLSRKLARSTVLLWLIFFGNAFS YYGLVLLTTQLNRPDRCNPNTPNSENNSDGGIDYKNVFITTLAECPSLILVGVFVDRIGRKISMAGLFFICIAFVLPLVVHQSPLVTTILLFGARICITG TFAVAFLIAPELYPTSVRSTGFGLASAMGRIGGMTCPFVAVGLMEGCHQREALLLFAAVVAIGLVSTLFLPYDTMGRELTESIASTKYEKQHEEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10033337 [exp]	0	1
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Lus10034306 [exp]	2.6	0.9639
AT4G13400			2-oxoglutarate (2OG) and Fe(II...		Lus10017737 [exp]	3.2	0.9381
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10043046 [exp]	6.5	0.9319
AT5G65790	MYB	AtMYB68	myb domain protein 68 (.1)		Lus10028248 [exp]	6.6	0.9608
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Lus10028625 [exp]	7.4	0.9418
AT1G05030			Major facilitator superfamily ...		Lus10035315 [exp]	8.9	0.9399
AT2G24830	C3HZnF		zinc finger (CCCH-type) family...		Lus10020095 [exp]	9.8	0.9071
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10040945 [exp]	12.2	0.9473
AT3G46540			ENTH/VHS family protein (.1)		Lus10040297 [exp]	12.4	0.9476
AT1G68710			ATPase E1-E2 type family prote...		Lus10035068 [exp]	16.7	0.9384

Compare expression of checked genes

Lus10033337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.