Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13750 610 / 0 ZIFL1 zinc induced facilitator-like 1 (.1.2.3) AT5G13740 566 / 0 ZIF1 zinc induced facilitator 1 (.1) AT3G43790 549 / 0 ZIFL2 zinc induced facilitator-like 2 (.1.2.3) AT5G13940 84 / 5e-17 aminopeptidases (.1) AT3G46980 42 / 0.001 PHT4;3 phosphate transporter 4;3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034794 [exp] 869 / 0 AT5G13750 645 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10034847 [exp] 792 / 0 AT5G13750 664 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10033392 [exp] 779 / 0 AT5G13750 659 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10033391 [exp] 737 / 0 AT5G13750 642 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10037341 [exp] 686 / 0 AT5G13750 640 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10035766 [exp] 662 / 0 AT5G13750 622 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10034846 [exp] 649 / 0 AT5G13750 600 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10037425 [exp] 570 / 0 AT3G43790 687 / 0.0 zinc induced facilitator-like 2 (.1.2.3) Lus10000256 [exp] 363 / 1e-124 AT5G13750 318 / 3e-108 zinc induced facilitator-like 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G010600 [exp] 657 / 0 AT5G13750 630 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Potri.016G024400 [exp] 600 / 0 AT5G13750 588 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Potri.006G026200 [exp] 582 / 0 AT5G13750 572 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Potri.010G248401 [exp] 181 / 2e-54 AT5G13750 144 / 2e-41 zinc induced facilitator-like 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10033338 pacid=23172219 polypeptide=Lus10033338 locus=Lus10033338.g ID=Lus10033338.BGIv1.0 annot-version=v1.0 ATGGCAGCAGCAGAAGAGTATACAGTTCCACTGTTAAAGAGGCAGTATTATGAGAATTGTCCTGGTTGTAAGGTCGATCAGCACAAATATTTGAGCAGAG GATTTCCTATTCGAGAGTTCCTTTCAATATGGATTGTTGTGCTTTGTACAGCTCTCCCAATATCGTCTCTCTTTCCCTACCTTTATTTCATGGTTAGGGA TTTCAAAATTACAGAAAAAGAGGAAGACATTGGTTACTATGCTGGATATGTTGGATCCTCATTTATGTTCGGTAGAGCTTTGACCTCTTTTGCGTGGGGA TTAGTCGCTGATCGCTACGGTCGAAAGCCTGTTATACTTTTTGGAACTATGTCTGTGGTGGTTTTCAACATTCTCTTCGGCCTCAGTACAAAGTTTTGGA TGGCAGTTACTGCAAGATTCTTACTTGGATCCTTGAATGGTTTACTTGGACCAATAAAGGCGTATGCAAGCGAACTTTTCAGAGACGAACATCAAGCATT GGGTTTGTCAACGATTACAACAGCATGGGGTATAGGATTGATCGTTGGTCCAGCTTTAGGAGGTTACTTGGCCCAGCCAGCAGAAAATTACCCAACTCTG TTCTCCAAGGATTCTTTATTTGGGAGGTTTCCCTACTTCTTGCCCTCCCTTGCCATAGCGGTTTTTGCCAGTGGAGTGACAATAGCTTCATTCTGGCTCC CGGAAACTTTGCACAACCACAAAGAAAATATGGAACTATGTCGCGACCCTTCCGATGCACTGGAAACTGCACCTGGCAGCACTGGTGGATCCAAGGGAGA CGACGAGGAATCAGCAATTGAGCAAAAGAAACCAGCTTCTTCCGAGAATAGCCTCCTAAGAAATTGGCCTCTAATGTCATCTATCATCATATATTGCATC TTCTCACTTCATGATATGGCTTACCAAGAGATATTTTCATTATGGGCTGTGAGTCCCAGAAAGCTTGGGGGACTTGGTTATTCCACACAGAAAGTTGGTG AAGTTCTGGCAGTCTCAGGTCTTGGACTGCTTGTGTTCCAACTTACCCTGTATCCATATGCGGAGAGGGTTTTCGGACCTGTAATGGTGTGCCGTATTGC TGCTGCATTATCAATTCCATTGTTGGCAAGTTACCCATTTATGTCAAAATTGACGGGTTTTACTCTAAATCTGCTACTAAATTGCGCATCTATATTGAAG AATCTCCTATCAGTGTCGATCATAACTGGCTTGACTATTCTACAAAACAATGCAGTGGAGCAACATCAGAGAGGAGCTGCTAACGGGATCTCAATGACAG GAATGTCTCTGTTCAAAGCAGTTGGTCCGGCTGGAGGAGGTTCTCTATTTTCATGGGCAGAGACGCGGCAAGATGCAGCGTTCCTTCCAGGAAATCAAAT GGTGTTCTTTGTACTCAACTTGGTTTCGGGGCTTGGCTTGCTGCTCAGTTTCAGGCCATTCCTACCCTACACTCGCCGCCGCTAA
AA sequence Show only first row Show all	>Lus10033338 pacid=23172219 polypeptide=Lus10033338 locus=Lus10033338.g ID=Lus10033338.BGIv1.0 annot-version=v1.0 MAAAEEYTVPLLKRQYYENCPGCKVDQHKYLSRGFPIREFLSIWIVVLCTALPISSLFPYLYFMVRDFKITEKEEDIGYYAGYVGSSFMFGRALTSFAWG LVADRYGRKPVILFGTMSVVVFNILFGLSTKFWMAVTARFLLGSLNGLLGPIKAYASELFRDEHQALGLSTITTAWGIGLIVGPALGGYLAQPAENYPTL FSKDSLFGRFPYFLPSLAIAVFASGVTIASFWLPETLHNHKENMELCRDPSDALETAPGSTGGSKGDDEESAIEQKKPASSENSLLRNWPLMSSIIIYCI FSLHDMAYQEIFSLWAVSPRKLGGLGYSTQKVGEVLAVSGLGLLVFQLTLYPYAERVFGPVMVCRIAAALSIPLLASYPFMSKLTGFTLNLLLNCASILK NLLSVSIITGLTILQNNAVEQHQRGAANGISMTGMSLFKAVGPAGGGSLFSWAETRQDAAFLPGNQMVFFVLNLVSGLGLLLSFRPFLPYTRRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10033338 [exp]	0	1
AT1G47530			MATE efflux family protein (.1...		Lus10042130 [exp]	8.7	0.8895
AT3G23570			alpha/beta-Hydrolases superfam...		Lus10004436 [exp]	9.9	0.8688
AT1G78780			pathogenesis-related family pr...		Lus10042792 [exp]	12.3	0.8853
AT5G06740			Concanavalin A-like lectin pro...		Lus10016257 [exp]	14.0	0.8850
AT5G47550			Cystatin/monellin superfamily ...		Lus10027320 [exp]	15.0	0.8585
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Lus10019808 [exp]	16.2	0.8816
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10020437 [exp]	19.0	0.8800
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10038492 [exp]	20.3	0.8052
AT5G39220			alpha/beta-Hydrolases superfam...		Lus10032977 [exp]	21.7	0.8611
AT1G65820			microsomal glutathione s-trans...		Lus10020793 [exp]	23.7	0.8677

Compare expression of checked genes

Lus10033338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.