Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20190 551 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G50610 356 / 1e-113 Leucine-rich repeat protein kinase family protein (.1) AT4G31250 338 / 7e-107 Leucine-rich repeat protein kinase family protein (.1) AT2G07040 325 / 3e-102 ATPRK2A Leucine-rich repeat protein kinase family protein (.1) AT5G35390 322 / 6e-101 Leucine-rich repeat protein kinase family protein (.1) AT3G02880 250 / 4e-74 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 249 / 2e-73 RLK902 receptor-like kinase 902 (.1) AT5G20690 237 / 8e-69 Leucine-rich repeat protein kinase family protein (.1) AT1G10850 233 / 2e-67 Leucine-rich repeat protein kinase family protein (.1) AT5G24100 231 / 6e-67 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034795 [exp] 706 / 0 AT3G20190 445 / 1e-150 Leucine-rich repeat protein kinase family protein (.1) Lus10035710 [exp] 567 / 0 AT3G20190 509 / 3e-175 Leucine-rich repeat protein kinase family protein (.1) Lus10017144 [exp] 471 / 4e-157 AT5G35390 597 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037297 [exp] 439 / 2e-150 AT3G20190 420 / 3e-143 Leucine-rich repeat protein kinase family protein (.1) Lus10026988 [exp] 362 / 4e-116 AT4G31250 606 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10020183 [exp] 355 / 3e-113 AT4G31250 599 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027597 [exp] 333 / 3e-104 AT5G35390 603 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022946 [exp] 322 / 4e-100 AT5G35390 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017756 [exp] 275 / 6e-83 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G147300 [exp] 515 / 7e-175 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G078600 [exp] 508 / 2e-172 AT5G35390 660 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G002000 [exp] 427 / 1e-141 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) Potri.004G170274 [exp] 394 / 3e-132 AT3G20190 408 / 1e-137 Leucine-rich repeat protein kinase family protein (.1) Potri.014G002700 [exp] 403 / 6e-132 AT3G20190 415 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) Potri.018G002600 [exp] 374 / 5e-121 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G279300 [exp] 361 / 5e-116 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G068800 [exp] 336 / 3e-106 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1) Potri.018G074300 [exp] 279 / 1e-84 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G130600 [exp] 253 / 4e-75 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033339 pacid=23172114 polypeptide=Lus10033339 locus=Lus10033339.g ID=Lus10033339.BGIv1.0 annot-version=v1.0 ATGGGCGCGCAAGTACCCGGACTTGCGTGCTTAACCTCTTTTGCATCATCAATCGGGACACCACCACCACCACCAGCATCATCATGTTTGAAATTTTTAT CATCTGTAGCGATATTATTATTGTCAGCATCAGCAGTCTTGGTATCTGCAGGAGGATCCCCACAATCGGACGCATTGCTGAAATTCAAAGCCGGGTTAGG AGACAATGATGCCCTGGGAACATGGGACCCGGCCACGGAGCCTTGCGACGGTGACGAATCCAACTGGGTCGGCGTGCTGTGTGCAAAAGGAAGCGTCTGG GGGATACAGCTGGAGCACATGCAGTTAACGGGCGTGGTTGACATGAACGCGTTGGTGTCCATGGGCGATATCAGGACGTTGAGCCTGATGGATAACAGAC TGGATGGTCCGTTGCCGGAGGTGAAGAAGCTTGGAAAACTGAAGTCGTTGTTCTTGTCGAACAATTACTTCTCCGGGGAGATTCCTGCAGGGGCGTTCAA AGGTATGGGGTCGCTGAAGACGCTGTACCTTGCGAATAATGATTTCACAGGGAGGATACCTGAGTCTATTACAACGCTGCCTAAGCTTACAGTGGTGAAG CTTGATGGGAATCAGTTTCAGGGTAGAATTCCTGAGTTTCAGCAGAAGTTCCTGCGAGCTGTGAATTTGGCTAAAAATGATTTGGAAGGTCCTATTCCTA AGAGCCTCAGCCACATGCATTCCAGCTCCTTCTCAGGCAACATAGGGCTATGTGGTGCACCCTTAGCTCCATGCTCGGCAGCCCCACCACGGTCTCCCAC AATCTCTCCATTACCATCTCTGCCATCAGTATTGGCTGAGAAAGAGAGAAAGACCAACTTGACACTAGGGATCATCCTCATTCTCCTGTCGCTGGTAATC ATACTCATGATGATCATCTTATGTCTTCTGCTCCGCCGCCGCCGCCACCGAACCTGCCCCTCCTCCCCACCGGCGGTCATCACCCACGTCAAATCCATGA CTCCCACTGCCATGGAGACTGCCACGATGGTTAAGCCGGTTCAACGGGAGTCAACGATAAAGAAGGTGGCGGTTGAGCAGGTGAACCAGCTGATTTTCGT GAGGGACGACATGAAGGAGAGGTTCGAGCTGCAGGATTTGCTGAGGGCGTCGGCGGAGGTGTTGGGGAGCGGGACGTTTGGGGCGTCGTACAAGGCAGGG GTGATTGGCCAGCCGGCGATGGTGGTGAAGAGGTATCGGCATATGAACAACGTTGGAAGGGAGGAGTTCCATGACCACATGAGGAGGATTGGGAAGTTGG ATCATCCTAACTTACTCCCACTCGTGGCTTGTTACTATAGGAAGGAGGAGAAGCTTTTGGTGTCTAAATTTGTGAATAATGGAAGCTTGGCTACCCGTCT CCATGGTAACCATTTATCGGAAGAAGCATTGGATTGGCCAACACGATTGAAGATAATCAGAGGAATAGCAAAGGGTTTAGAACATCTCCACAACGAGCTC CTCATAACTACCCCTCACGGCCACTTGAAATCCTCAAACGTCCTTCTCGACGATGACTCCTTCGAGCCCATGCTGACGGATTACGGGATACGACCCATGA TCAGCGCGGACCTCGCACGCAAGCTGATGATCACTTACAAGTCGCCGGAGCACGCTCAACACGGGCGGACTTGGGGGAAGACGGACGTGTGGAGCCTAGG GATAGTGATGCTAGAGATACTGACCGGGAAGTACCCTGAGAACTACCTAACACAAGGGTACGCCAGTAATTCAGACCTGGCGACGTGGGTGAACAACATG GTGAAGGACAAAAAGATAGGCGAGGTGTTCGATAAGGACATGGTCGGGACATCCAAGGGTGAGATGATTAAGGTTTTGAAGTTGGCTTTGAGTTGTTGTG AGGAGGATGTCGAGAGAAGGGTTGATATTAAGGAAGTTGTTGAGAAGATTGAACATTTGATTGATGGCCAGGATAGTGGAAATGAACAATAA
AA sequence Show only first row Show all	>Lus10033339 pacid=23172114 polypeptide=Lus10033339 locus=Lus10033339.g ID=Lus10033339.BGIv1.0 annot-version=v1.0 MGAQVPGLACLTSFASSIGTPPPPPASSCLKFLSSVAILLLSASAVLVSAGGSPQSDALLKFKAGLGDNDALGTWDPATEPCDGDESNWVGVLCAKGSVW GIQLEHMQLTGVVDMNALVSMGDIRTLSLMDNRLDGPLPEVKKLGKLKSLFLSNNYFSGEIPAGAFKGMGSLKTLYLANNDFTGRIPESITTLPKLTVVK LDGNQFQGRIPEFQQKFLRAVNLAKNDLEGPIPKSLSHMHSSSFSGNIGLCGAPLAPCSAAPPRSPTISPLPSLPSVLAEKERKTNLTLGIILILLSLVI ILMMIILCLLLRRRRHRTCPSSPPAVITHVKSMTPTAMETATMVKPVQRESTIKKVAVEQVNQLIFVRDDMKERFELQDLLRASAEVLGSGTFGASYKAG VIGQPAMVVKRYRHMNNVGREEFHDHMRRIGKLDHPNLLPLVACYYRKEEKLLVSKFVNNGSLATRLHGNHLSEEALDWPTRLKIIRGIAKGLEHLHNEL LITTPHGHLKSSNVLLDDDSFEPMLTDYGIRPMISADLARKLMITYKSPEHAQHGRTWGKTDVWSLGIVMLEILTGKYPENYLTQGYASNSDLATWVNNM VKDKKIGEVFDKDMVGTSKGEMIKVLKLALSCCEEDVERRVDIKEVVEKIEHLIDGQDSGNEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20190			Leucine-rich repeat protein ki...		Lus10033339 [exp]	0	1
AT1G09280			unknown protein		Lus10008045 [exp]	2.0	0.8482
					Lus10012802 [exp]	2.8	0.8400
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10036655 [exp]	5.3	0.8576
AT1G59520		CW7	CW7 (.1.2.3)		Lus10003786 [exp]	6.3	0.8479
AT1G69400			Transducin/WD40 repeat-like su...		Lus10026051 [exp]	7.0	0.8433
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10002571 [exp]	9.1	0.8707
AT4G37280			MRG family protein (.1)		Lus10019312 [exp]	9.2	0.8134
AT4G34880			Amidase family protein (.1)		Lus10027852 [exp]	11.8	0.8221
AT1G26340		B5 #6, B5#6, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10000651 [exp]	15.9	0.8298
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10007723 [exp]	16.7	0.8364

Compare expression of checked genes

Lus10033339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.