Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24370 548 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G78940 540 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT4G31230 538 / 1e-180 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G16760 531 / 7e-178 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G20200 509 / 4e-169 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G26150 499 / 2e-166 protein kinase family protein (.1) AT5G12000 499 / 3e-166 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G35380 496 / 8e-165 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G07020 490 / 7e-163 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G17540 431 / 8e-140 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035712 [exp] 715 / 0 AT1G16760 624 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10037298 [exp] 681 / 0 AT1G16760 820 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10021596 [exp] 546 / 0 AT2G24370 828 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10027593 [exp] 543 / 0 AT2G24370 665 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040573 [exp] 540 / 0 AT2G24370 815 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008542 [exp] 535 / 2e-179 AT2G24370 823 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020185 [exp] 526 / 4e-179 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026989 [exp] 526 / 1e-175 AT2G24370 1014 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024212 [exp] 524 / 1e-174 AT2G24370 780 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G001900 [exp] 582 / 0 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.014G001700 [exp] 570 / 0 AT1G78940 783 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.006G078500 [exp] 561 / 0 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G170742 [exp] 546 / 0 AT1G78940 786 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.018G002400 [exp] 535 / 9e-180 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G061600 [exp] 510 / 5e-170 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G225300 [exp] 504 / 2e-167 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G198300 [exp] 484 / 9e-159 AT5G12000 639 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G147000 [exp] 355 / 1e-110 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.004G170901 [exp] 340 / 2e-106 AT1G78940 584 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10033340 pacid=23172048 polypeptide=Lus10033340 locus=Lus10033340.g ID=Lus10033340.BGIv1.0 annot-version=v1.0 ATGTGGCATCAAAAAGGAAATCCGACGAAAAGAGGAGGTGGAGGAAGAGGAAACGGATTGATAGCCGTTGCGATTGACAAAGACAAAGGAAGTCAGCATG CATTGAAATGGACAGTGGAGACTCTCAACAACAGAGGCAATCCCATCATCCTCATTCATGTTCTTCATAAACCTTCAACTTCCTTTATTGCAAGCCAGGC AGGAGGAGGTACAGGGAAGCTGGATCTTGAGAACTTGACCAAGGATCTTTTCCTCACTTTTCATTGCTATTGTACCCGTAAAGATGTGCAATGCTTTGAT GTTATACTGGAAGGCAACGATGTTGGGAAAGCAATCACAGAATACGTTTCCTACGCTGCCATTGAGACCTTGGTTTTAGGTTCCCCTTCTCGCCATTCTT TTATTAGGAAGTTCAAGGCAGATATACGTGGTAATGTACTAAAAGGGGCACCAGATTTTTGCAACGTTTATGTGATCACAAAAGGGAAGCCTTGTTCAAT CAAACATGCATCTCGTCCTGCCCCCTACGTGTCTCCTCTACTGGACCAGCTGCAGAGTAACAATATTCCCACCACAGCCACTAATAATAATAACAACGAT GATGATGAAGCTGATCATTACGACGACGTTGCATCTCACATCTCTTCCAGAAGTAGGAGCTTTGTAGTAATTAATTATGATCTGAATCTAACGCCATGGT TACGTTGCATATCTCAAGAACGGGCACCCGCTGCTAGAACTCGTAACTCCTCCATCGATGAATCTTTCAGATCGGGATTTGGGAGAGGAGGGAGAGCAAT GAATGCAAGATCATTTGCTGAAATGCTGGAAACAGAAAACACTTCTTCTTCTTCTGCTGATGTTTCATTCATTAGCTCCGGCAGGCCCAGCACAGACACT TCTTCTTCTGTGGGCATGGGCGGCCCCTCCGACCATTTCGACATTTTGTCAAACCCGCAAGTCTCGACTAGCTCCGACAATAGCTTCGGATCGTCGTCGA TGATCTCTTCAAACAAGTTTGTGGACTTAGCTTCCATGCAAGAGTTCTCCTTCGGCTCCCAAGATCACAGCGCCGCAGCTTCTTCAGTTTCATCCCAAAA TGTGGATGACATGGAATCCGAGATGAAGAGACTAAGGTTGGAATTAAAGCAAACAATGGACATGTACAGTACAGCATGTAAAGAGGCCATTGCCGCCAAG CAAAAGGCGATGGAGATGCAACGGTGGAGAAGCGAAGAAGAACAAAAGCTGGAAGAAGCCAAGAGCTCCGAAGAAGCCGCCTTATCGAGTGTTGAGGAAG AGCGAGCTCGATGCAAAGCTGCTATGGAATCAGCTGAAGCGGCTGAGAAGATTGCGGAAAAGGAAGCTCAGAAGAGAATCTCACTAGAGTTGAAAACGCT CAAGGACGCCGCGGAGCTAAAGAAGGCGATGAGCGCCGTTGCGAAGAACAACGATCTTAGGTACAGAAGGTATTCCATCGATGATATCGAGAAGGCTACT GATGGGTTCGATGCATCGAGGAAGATCGGAGAAGGTGGGTACGGACCGGTTTTCAAATGCTACCTTGATCATACCCCCGTAGCTGTTAAAGTGTTGCGGC CTGACGCTGTTCAAGGGAGGTCACAGTTTCAAAGAGAGGTAGAAGTGCTAAGCATGATACGACACCCAAACATGGTCCTACTCCTAGGAGCATGTCCCGA GTACGGCATCCTAGTCTACGAATACATGGCAAGAGGAAGCCTAGAAGACTGCCTCTTCCGCAAAACCACCACCTCCGTCACCACTCCACCCCCACTCTCA TGGCAACTCCGCTTCAAGATCGCTGCCGAGATCGCAACGGGCCTCCTCTTCCTCCACCAGACCAAACCCGAGCCCCTAGTACACCGCGACCTCAAGCCGG CCAACATCCTCCTCGACATCAACTTCGTCAGCAAGATAAGCGATGTCGGCCTCGCCAGGCTGGTCCCAGCCAACGTGGCTGAGAATGTCACCCAATACCA CATGACATCAGCTGCGGGGACGTTCTGTTACATCGACCCGGAGTACCAGCAGACGGGAATGCTGGGCGTGAAATCAGATGTCTACTCGCTCGGGATCATA CTGTTGCAGATCATAACTGCTAGGCCGCCCATGGGGTTGTCCCATGTTGTGGAGATGGCGATCGAGAACGGCAAGTTCGGTGAGGTTTTGGACAAGGATG TCAGTGATTGGCCGATGGAGGAGACTTTGACGCTGGCCGAGTTTGGGCTTAAGTGTGCAGAGTTGCGGCGGAAGGATAGGCCGGATCTTGGGAAGGCGGT TTTGCCGGTTCTTAATAAGTTGAGGGAGTTGGCAGAGGAGAACATGGGGTACATGTTTTACATGGGTGCTGCTCCGAATCCAAACCGGAGTGTGGCTTCT GCAGTGACCACACAGGAAGTGATGAGTGATCCACAAGTCATAAATTCTGGATTCTCTTCAAAGAATCCGTCACCTGTGTGCTCTCAAGTGGAAACATAA
AA sequence Show only first row Show all	>Lus10033340 pacid=23172048 polypeptide=Lus10033340 locus=Lus10033340.g ID=Lus10033340.BGIv1.0 annot-version=v1.0 MWHQKGNPTKRGGGGRGNGLIAVAIDKDKGSQHALKWTVETLNNRGNPIILIHVLHKPSTSFIASQAGGGTGKLDLENLTKDLFLTFHCYCTRKDVQCFD VILEGNDVGKAITEYVSYAAIETLVLGSPSRHSFIRKFKADIRGNVLKGAPDFCNVYVITKGKPCSIKHASRPAPYVSPLLDQLQSNNIPTTATNNNNND DDEADHYDDVASHISSRSRSFVVINYDLNLTPWLRCISQERAPAARTRNSSIDESFRSGFGRGGRAMNARSFAEMLETENTSSSSADVSFISSGRPSTDT SSSVGMGGPSDHFDILSNPQVSTSSDNSFGSSSMISSNKFVDLASMQEFSFGSQDHSAAASSVSSQNVDDMESEMKRLRLELKQTMDMYSTACKEAIAAK QKAMEMQRWRSEEEQKLEEAKSSEEAALSSVEEERARCKAAMESAEAAEKIAEKEAQKRISLELKTLKDAAELKKAMSAVAKNNDLRYRRYSIDDIEKAT DGFDASRKIGEGGYGPVFKCYLDHTPVAVKVLRPDAVQGRSQFQREVEVLSMIRHPNMVLLLGACPEYGILVYEYMARGSLEDCLFRKTTTSVTTPPPLS WQLRFKIAAEIATGLLFLHQTKPEPLVHRDLKPANILLDINFVSKISDVGLARLVPANVAENVTQYHMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGII LLQIITARPPMGLSHVVEMAIENGKFGEVLDKDVSDWPMEETLTLAEFGLKCAELRRKDRPDLGKAVLPVLNKLRELAEENMGYMFYMGAAPNPNRSVAS AVTTQEVMSDPQVINSGFSSKNPSPVCSQVET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16760			Protein kinase protein with ad...		Lus10033340 [exp]	0	1
					Lus10020451 [exp]	4.0	0.9474
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10030546 [exp]	5.8	0.9462
					Lus10021851 [exp]	7.3	0.9426
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	8.5	0.9426
					Lus10008791 [exp]	9.5	0.9426
AT4G13230			Late embryogenesis abundant pr...		Lus10011889 [exp]	9.9	0.9395
					Lus10012440 [exp]	10.4	0.9426
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10035637 [exp]	10.7	0.8713
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10022696 [exp]	12.0	0.6937
					Lus10031183 [exp]	12.0	0.9379

Compare expression of checked genes

Lus10033340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.