Plant FIBer expression Database

Lus10033341 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G14850 702 / 0 Alg9-like mannosyltransferase family (.1.2)
AT1G02145 61 / 1e-09 EBS4, ALG12 EMS-MUTAGENIZED BRI1\(BRASSINOSTEROID INSENSITIVE 1\) SUPPRESSOR 4, homolog of asparagine-linked glycosylation 12 (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033296
[exp]
962 / 0 AT5G14850 697 / 0.0 Alg9-like mannosyltransferase family (.1.2)
Lus10034759
[exp]
833 / 0 AT5G14850 589 / 0.0 Alg9-like mannosyltransferase family (.1.2)
Lus10019399
[exp]
55 / 1e-07 AT1G02145 712 / 0.0 EMS-MUTAGENIZED BRI1\(BRASSINOSTEROID INSENSITIVE 1\) SUPPRESSOR 4, homolog of asparagine-linked glycosylation 12 (.1.2.3.4)
Lus10043256
[exp]
54 / 2e-07 AT1G02145 669 / 0.0 EMS-MUTAGENIZED BRI1\(BRASSINOSTEROID INSENSITIVE 1\) SUPPRESSOR 4, homolog of asparagine-linked glycosylation 12 (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G098700
[exp]
754 / 0 AT5G14850 720 / 0.0 Alg9-like mannosyltransferase family (.1.2)
Potri.002G139200
[exp]
48 / 1e-05 AT1G02145 706 / 0.0 EMS-MUTAGENIZED BRI1\(BRASSINOSTEROID INSENSITIVE 1\) SUPPRESSOR 4, homolog of asparagine-linked glycosylation 12 (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0111 GT-C PF03901 Glyco_transf_22 Alg9-like mannosyltransferase family
Representative CDS sequence
>Lus10033341 pacid=23172078 polypeptide=Lus10033341 locus=Lus10033341.g ID=Lus10033341.BGIv1.0 annot-version=v1.0
ATGAGGCAGAGAATTGTTGAAGCTAAAGCCACTGCCGTCGAAACCAACGATCAGCAGTATGAGGACAAGAGATCCATCAAATCCACTTCAGTTTCCGATA
CTAGAATCTTCGCCTTCTGTTTTGCTTTCCGGATACTCAATTCTCTCCTAATACAGACTTACTTCAACCCAGATGAGCACTGGCAATCCCTCGAAGTCGC
TCACCGTCTTGTTTTCGGGTATGGTTATTTGACGTGGGAATGGAAGAAGGGGATTCGTAGTTATTTGCACCCTTTGCTTTTTGCTGCCTTTTATAAAGTT
CTTGCAGTTTTGGGTCTTGATACTCCATGGTTAATGGTAAAGGCTCCTAGGTTATTGCAAGGTGTGTTTTCAGCATTTGGTGATTTGTACTGCTACAAAC
TTTCTTCAGCGATCTTTGGTGCTACTGCTGCACGTTGGGCTGTACTTAGAATCGGTTGTCTTCCTGAATGGGTATTTCACTTAACTCCACAACAGCTTTT
CTCTCAATTGACCAATTGGTTTATGTTCTTTTGCTTCAACCGCACATTATCCAATAGTCTGGAAGCTGTTCTTACATTGGTGGGTTTGTATCACTGGCCG
TGTATGCGAATCTCTCCTGGTGATGGTTCACGGAAGGTGGGGTTGCTGATAGCGGGATTCGCCTGTGCAATCCGACCAACATGTGCTATTATATGGGTTT
ATGTTGGCTTTCTTGAGCTGCTTCTTACACGTGATCGAATAAGGTTTTTTGCTCTGGAAGTGGTCCCTATAGGGGTACTCATACTTGGACTTTCATGTTT
AGTTGATCGGGTCATGTATGGCTCTTGGGTATTTGTGCCTTTGAATTTTTTGAAGTTCAATTTTCTTTCCTCTGGCGGAGATTATTATGGAACTCATCCA
TGGCACTGGTACTTTTCTCAAGGATTTTCAGTTATGGTCTTCACTTTCTTACCATTTTCCATAGCTGGGATCATCAAGTCTAGACATTGGAAGCTTTCTG
GCCTAGTTGCATGGGTTTTAACTCTATATAGCATATTGGGTCACAAAGAATTCAGATTTGTGTTACCTGTTCTTCCAATAGCTTTGATGTTTTCTGGGTG
TTCACTGGCTGTGATGGCAAAACCTTCTCCGTTGAGTGGAAAAAGGAAAGGTTCTTCGAGCAACAAATATCGTACGCAAGTTGTATTTGCTGTCTTCTTC
TTGCTTGCCACAAACATTCCAATGGCCTTGTACATGAGTTTGGTCCATCAGAGAGGAACCGAAGATGTGATGGTCTATCTATCCAAAGAAGCTCGTGGAG
ATAAAGTCAGTAGTATACTCTTCTTAATGCCTTGTCATGCTTCACCTTACTACTCCACTCTGCACTATAACGTGCCAATGCGTATCCTGGACTGCACACC
AAGCGAAGACAGAGAAATCCCAGATGAGTCGGACCGATTCATGATTGATCCTGTTGGTTTTATGGAAGAATTCTCAAAGGAGTGGTCTTTACCTAGTCAT
ATTGTGTTATTCGAATCAGAGGAGAGACAGTTGAAGGATTTTTTTATGTCAAATTCCTTTAAACAGTCACGGAGGTTTTTTCATGCTCACTTCAAGGTTG
ACCGCGACCTCCAAGCTTCAGTAGTAGTTTATACTTTGGACAACCATTGA
AA sequence
>Lus10033341 pacid=23172078 polypeptide=Lus10033341 locus=Lus10033341.g ID=Lus10033341.BGIv1.0 annot-version=v1.0
MRQRIVEAKATAVETNDQQYEDKRSIKSTSVSDTRIFAFCFAFRILNSLLIQTYFNPDEHWQSLEVAHRLVFGYGYLTWEWKKGIRSYLHPLLFAAFYKV
LAVLGLDTPWLMVKAPRLLQGVFSAFGDLYCYKLSSAIFGATAARWAVLRIGCLPEWVFHLTPQQLFSQLTNWFMFFCFNRTLSNSLEAVLTLVGLYHWP
CMRISPGDGSRKVGLLIAGFACAIRPTCAIIWVYVGFLELLLTRDRIRFFALEVVPIGVLILGLSCLVDRVMYGSWVFVPLNFLKFNFLSSGGDYYGTHP
WHWYFSQGFSVMVFTFLPFSIAGIIKSRHWKLSGLVAWVLTLYSILGHKEFRFVLPVLPIALMFSGCSLAVMAKPSPLSGKRKGSSSNKYRTQVVFAVFF
LLATNIPMALYMSLVHQRGTEDVMVYLSKEARGDKVSSILFLMPCHASPYYSTLHYNVPMRILDCTPSEDREIPDESDRFMIDPVGFMEEFSKEWSLPSH
IVLFESEERQLKDFFMSNSFKQSRRFFHAHFKVDRDLQASVVVYTLDNH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G14850 Alg9-like mannosyltransferase ... Lus10033341
[exp]
0 1
AT5G27640 ATTIF3B1, ATEIF... EUKARYOTIC TRANSLATION INITIAT... Lus10040831
[exp]
4.5 0.8261
AT1G31480 SGR2 shoot gravitropism 2 (SGR2) (.... Lus10002946
[exp]
7.3 0.8217
AT5G19660 ATSBT6.1 ,ATS1P SITE-1 protease (.1) Lus10034919
[exp]
8.0 0.8051
AT2G37520 Acyl-CoA N-acyltransferase wit... Lus10025315
[exp]
15.8 0.8001
AT5G06120 ARM repeat superfamily protein... Lus10041603
[exp]
18.0 0.8157
AT2G19560 ESSP1, AtTHP1, ... ectopic expression of seed sto... Lus10032680
[exp]
20.8 0.7439
AT3G11620 BAS1 alpha/beta-Hydrolases superfam... Lus10016975
[exp]
22.2 0.7166
AT1G15240 Phox-associated domain;Phox-li... Lus10025785
[exp]
28.0 0.7983
AT3G20720 unknown protein Lus10011166
[exp]
29.1 0.7704
AT4G32700 TEB TEBICHI, helicases;ATP-depende... Lus10007673
[exp]
35.9 0.7650

Lus10033341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.