Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12970 769 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT3G57880 768 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 748 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT4G20080 716 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT4G11610 709 / 0 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G06850 699 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 698 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G04150 662 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G22610 658 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G61300 624 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016280 [exp] 776 / 0 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10012026 [exp] 773 / 0 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 714 / 0 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 709 / 0 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 706 / 0 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 691 / 0 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 664 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10011271 [exp] 624 / 0 AT1G04150 1187 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10033097 [exp] 577 / 0 AT1G74720 1566 / 0.0 QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G043000 [exp] 874 / 0 AT3G57880 988 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.011G052000 [exp] 861 / 0 AT3G57880 988 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 778 / 0 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 776 / 0 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 741 / 0 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.003G210801 [exp] 737 / 0 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058700 [exp] 732 / 0 AT5G06850 1321 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 728 / 0 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 727 / 0 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.016G049300 [exp] 719 / 0 AT5G06850 1355 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0484 [flax] [poplar] Peroxisome PF08372 [flax] [poplar] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Lus10033343 pacid=23172061 polypeptide=Lus10033343 locus=Lus10033343.g ID=Lus10033343.BGIv1.0 annot-version=v1.0 ATGCCACCAAAGGAGAAGCAGCACCACCACAAGGATAATGATTTCTCTCTCAAGGAGACATCTCCGGTCATCGGCGGAGGCCGTAACTCCACCTCCACCA TCGCTCTGGTCCAGCCCCGCCATTTCCTCTACGTCAGAATCGTCCGAGCCAAACTCAACCCTGCTGATTCAGACGCCCCCATCTGCCACCGTCCATTCAT CGAGCTCGGAATCGGCGGCTACAAAGCAGCCACCCGGGTCCTTCAGGCTCCGACCCATAACCCGGAATGGAACCAGGTTTTCGCCTTTGCCAAGGACAAC CGCCTGCACGGAAACATCCTGGAATTGATTCTCAAAGATGCCGGTCCACCACCAGAAGAAGAATCCTCCGAGAGTAAGAATTATCAGCCTAAAGTCATGG GTAGGGTCTATTTTGAGATGGGCGATGTCCCGACCCGGTTCCCTCCCGACAGTCCGTTGGCTCCCCAATGGTACAAATTGGATGCTGCAGGAGAGCTGAT GGCTGCGGTCTGGATCGGCAATCAAGCTGACGACGCCTACTCGATTGCGTGGCATTCTGACATGGAAAATGTCGGAGAGAACGTGACACACACTCGCTCC AAAATCTATCATTCTCCACGGCTCTGGTACCTAAGGATCGAGCTAATCGGAGCTCAGGATTTGGTATTTCCTGACAGGAATAATCACCCGAGGGGTACTG AAGTCTACGTCAGGGCGATGTTAGGGCACATGATCCTGAAGAGCAGGATTTCTCCTGACAGAACCACCTCAAATTCTGGATGGAATGAGGAGCTCGTTTT TGTCGCAGCAGAACCTTTCGACGATCCTTTAATCTTGATTGTGGAGGATCGAATCAGCGGTGGAAGCAACATCGGCAGGTCGGTGATCCCTCTCGAGAGC TTGGAGAGGAGGTTGGTGCCCGTTCCGGCCACCGGAGAGAAATGGATCAACCTTGAAAAGATTGAGAAGGTTCCCGAGAATGGTACTAAAGTGATCAAGT TCGGTGGAAGGCTACATTTGAGGGCTTTCCTCGATGGTGTATACCACGTGTTTGACGAACCGACTTACTACTCGAGCGATCTCAGAGCTATTTCTCCCAA GCTGTGGCCTGAGAGGATTGGGATATTGGAGCTCGGAATCCTGAAAGCCGAAAATCTGGTCCCGATGAAGTCCAAAGAAGGCGGTAGGGGTTCGACAGAT GCTTATTGTGTCGCGAAATACGGTCAGAAATGGGTCAGGACGAATACAGTAATCGACAGTTTTGCTCCGAGCTGGAATGAGCAGTACTATTGGGATGTTT ACGATCCTTACACAGTGATCACAATCGGAGTGTTCGACAACTCACAAATCGGTGGCAACAAGATTTCCGATCCTAGAATCGGGAAAGTCAGGATTCGACT TTCGACGCTCGAAACTGACCGAATCTACACCTTATCCTACCCGCTCATTGTCCTGCAGCCTAACGGAGTGAAGAAAACAGGGGAGCTTCATTTAGCAGTG AAATTCACTTCAACTTCTTTAGTCAACTTGCTCCAAACTTACGCACAGCCATTGTTCCCCAGAATGCATTACATCAATCCGATGTCAGTCTACCATCTCG ACTCACTCAGAGCACAAGCTAGACACATAATTTCGGCTCGACTCGGACGAGCAGATCCGCCGCTGAGAAGAGAAGTAGTGGAGTACATGCTCGATTCAGG GGCAAACGTATGGAGTTTAAGGAAAGGGAAAGTGAACATGCATAGGTTGTTGTCCAGCTTGAGCTTTTTATCAGCAATATCAAAAGCGTTCGATTCGATT CGAGAATGGAACAACCCCTCCCTTACACTCACAGTCTACTCAATCTTCCTAATCCTGGTTTACTTCCCTCAGTTGATTTTACCCTGCGTGTTCATAACCC TTTTCGCGGTGGGGATCTTGGGGTATCCGCAGAGGCCAAGGCATCCCCCTCACATGGACGTGAAGCTGTCGCAGGCTGAAGATGCTTCGGCGGACGAGCT GGATGAGGAATTCGACACGTTTCCAAGTTCGGTGAAGCAAGGGGAAGTGTTGAGGAGTCGGTACGATAGGTTGAGAGGGATAGGTGGGAGGGTGATGATG ATGGTGGGTGACTTGGCTACGCAGATGGAGAGGGTTCATTGTTTGTTGAGCTGGAGGGACCCCAGGGCTACGGTGTTGTTCTTGATGGCGTGTGTGGTGT GCTGCAGTTTGGTGTATGTTTTCCCAGTAAGGTATGTGGTGATATTGGGAGGGAGTTATGTGATTAGGCCGCCTAGGATGAGGATGAATGGTATGCCTTG TTTGCCTCATAACTTCCTCAGAAGGCTTCCTTCTAACATGGATTCCTTGCTCTGA
AA sequence Show only first row Show all	>Lus10033343 pacid=23172061 polypeptide=Lus10033343 locus=Lus10033343.g ID=Lus10033343.BGIv1.0 annot-version=v1.0 MPPKEKQHHHKDNDFSLKETSPVIGGGRNSTSTIALVQPRHFLYVRIVRAKLNPADSDAPICHRPFIELGIGGYKAATRVLQAPTHNPEWNQVFAFAKDN RLHGNILELILKDAGPPPEEESSESKNYQPKVMGRVYFEMGDVPTRFPPDSPLAPQWYKLDAAGELMAAVWIGNQADDAYSIAWHSDMENVGENVTHTRS KIYHSPRLWYLRIELIGAQDLVFPDRNNHPRGTEVYVRAMLGHMILKSRISPDRTTSNSGWNEELVFVAAEPFDDPLILIVEDRISGGSNIGRSVIPLES LERRLVPVPATGEKWINLEKIEKVPENGTKVIKFGGRLHLRAFLDGVYHVFDEPTYYSSDLRAISPKLWPERIGILELGILKAENLVPMKSKEGGRGSTD AYCVAKYGQKWVRTNTVIDSFAPSWNEQYYWDVYDPYTVITIGVFDNSQIGGNKISDPRIGKVRIRLSTLETDRIYTLSYPLIVLQPNGVKKTGELHLAV KFTSTSLVNLLQTYAQPLFPRMHYINPMSVYHLDSLRAQARHIISARLGRADPPLRREVVEYMLDSGANVWSLRKGKVNMHRLLSSLSFLSAISKAFDSI REWNNPSLTLTVYSIFLILVYFPQLILPCVFITLFAVGILGYPQRPRHPPHMDVKLSQAEDASADELDEEFDTFPSSVKQGEVLRSRYDRLRGIGGRVMM MVGDLATQMERVHCLLSWRDPRATVLFLMACVVCCSLVYVFPVRYVVILGGSYVIRPPRMRMNGMPCLPHNFLRRLPSNMDSLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12970			Calcium-dependent lipid-bindin...		Lus10033343 [exp]	0	1
AT5G01880			RING/U-box superfamily protein...		Lus10025144 [exp]	9.5	0.6226
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014403 [exp]	15.7	0.5596
					Lus10043052 [exp]	34.7	0.5264
					Lus10019586 [exp]	40.0	0.5002
AT2G15220			Plant basic secretory protein ...		Lus10026584 [exp]	42.3	0.5217
AT3G07690			6-phosphogluconate dehydrogena...		Lus10019761 [exp]	48.1	0.4755
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10008025 [exp]	48.5	0.5023
					Lus10027558 [exp]	56.8	0.5011
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10030271 [exp]	68.6	0.4924
					Lus10013743 [exp]	105.2	0.4593

Compare expression of checked genes

Lus10033343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.