Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32940 424 / 7e-145 GAMMAVPE, GAMMA-VPE gamma vacuolar processing enzyme (.1) AT3G20210 422 / 2e-144 DELTAVPE, DELTA-VPE delta vacuolar processing enzyme (.1.2) AT2G25940 419 / 4e-143 ALPHAVPE, ALPHA-VPE alpha-vacuolar processing enzyme (.1) AT1G62710 394 / 3e-133 BETAVPE, BETA-VPE beta vacuolar processing enzyme (.1) AT1G08750 76 / 9e-15 Peptidase C13 family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034798 [exp] 520 / 0 AT2G25940 260 / 9e-84 alpha-vacuolar processing enzyme (.1) Lus10007450 [exp] 448 / 2e-153 AT4G32940 754 / 0.0 gamma vacuolar processing enzyme (.1) Lus10024446 [exp] 415 / 5e-141 AT4G32940 717 / 0.0 gamma vacuolar processing enzyme (.1) Lus10032236 [exp] 412 / 4e-140 AT1G62710 712 / 0.0 beta vacuolar processing enzyme (.1) Lus10024599 [exp] 408 / 9e-139 AT1G62710 709 / 0.0 beta vacuolar processing enzyme (.1) Lus10034797 [exp] 145 / 2e-42 AT3G20210 104 / 4e-28 delta vacuolar processing enzyme (.1.2) Lus10006570 [exp] 81 / 4e-16 AT1G08750 578 / 0.0 Peptidase C13 family (.1.2.3) Lus10005520 [exp] 79 / 1e-15 AT1G08750 582 / 0.0 Peptidase C13 family (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G003400 [exp] 470 / 2e-162 AT2G25940 534 / 0.0 alpha-vacuolar processing enzyme (.1) Potri.018G059400 [exp] 442 / 4e-152 AT4G32940 752 / 0.0 gamma vacuolar processing enzyme (.1) Potri.006G232900 [exp] 441 / 2e-151 AT4G32940 742 / 0.0 gamma vacuolar processing enzyme (.1) Potri.003G113300 [exp] 413 / 8e-141 AT1G62710 704 / 0.0 beta vacuolar processing enzyme (.1) Potri.001G119800 [exp] 407 / 2e-138 AT1G62710 720 / 0.0 beta vacuolar processing enzyme (.1) Potri.019G014000 [exp] 77 / 5e-15 AT1G08750 608 / 0.0 Peptidase C13 family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0093 [flax] [poplar] Peptidase_CD PF01650 [flax] [poplar] Peptidase_C13 Peptidase C13 family
Representative CDS sequence Show only first row Show all	>Lus10033344 pacid=23172119 polypeptide=Lus10033344 locus=Lus10033344.g ID=Lus10033344.BGIv1.0 annot-version=v1.0 ATGACGACGACGACCAACCTTCAACTACTAATCACCGCCCTCACCTTCTTCCTCACCTTCTCTCCCTCTCTCCAACTCCGACCACCGTCAACCCCGGCGA GGAACAACAGCGCCACTACTGCACCGGCACCGGCGGGGACGAGGTGGGCCATACTCGTGGCTGGGTCCAACAGCTTTGACAACTACAGGCACCAGGCCGA CGTGTGTCACGCGTACCGCGTTCTGAAACGGGGAGGTTTGAAAGACGACAACATCGTGGTCTTCATGTACGACGACATCGCTTTCGATGAGGAAAACCCT CGCCCGGGGGTCGTCATCAACAAGCCCACCGGCGACGATGTCTACTCTGGTGTACCCAAGGACTATACCAAAGAGAATTGTACGGCTGATAATTTGTACG CCGTAATTCTCGGTAATCAGTCTGCGTTGACTGGAGGCAGTGGCAAAGTGGTGAATAGTAGCCCAGACGACACCGTTTTCATCTACTATGCTGACCATGG CTCTCCTGGCGTAGTTGGTATGCCAGTGGGGGGAAGAGTGTACGCGAGAGAGCTGATGGATGTTCTGCAGAAGAAGCACAGTGCGAATGGCTACAAGAGT ATGGTGATTTACATGGAGGCGTGCGAGGCGGGGAGCATGTTCGACGGTGTCTTACCAAACGACATCAATATATACGCCGTCACCGCATCAAACCCGTCGG AGAGCAGTTACGCCTTCTACTGTCCCGACGAGTACCCTACTCCGCCTCCCGACTACTACACTTGCTTGGGTGACTTGTTCAGCATCTCTTGGCTCGAGGA CACCGATTTGCACGATCCCCGCTTCGAAACCCTTGATCAGCAATACCAACTGGTGAGGAGGAGGACGGGGAAGGATTATGGCGTTACGGAAGTACAAAGC TCTCACGTGATGCAGTACGGAGACATCACCATTGCTCAGCAACTGCTCTCTGTCTACATCGGCGGCGGCGGCTCGGACCCCTCTGTCGCCGTCAACTCGA TTAATCATCCCGGTAACTATAGCACCAACTCGAAAGCAATTAGCCAGCGGGATATCCTTCTCTCGCATCTCGAGCAACAGTTAAAGATAGCGGCAGAAGG GTCGCAGGAAAAGGCGGAAGCCCAAGAGAAGCTTAACAATGAGGTGTTCAATAGGAAGCGTGCGGATGAAACGATGAGTCGGATTGGGACGATGGTGTTT GGGGTTGAAAGTGCCGACAATTTGATCAACTTCGTTAGGCCTTCCGGCCAGCCTCTGGTTGATGACTGGGATTGCTTCAAGTCCTTTGTGGAAAAGTACG AGGAACTATGTGGGAAGATGACGGTGTATGGTAGAAAACACAGCAGGGGACTAGCTAACATGTGCAATGCTGGAGTCACTCTACACCAGCTCACCTCTGC TTGCTCCGATGTTTGCCATAGTATCATCACCTAA
AA sequence Show only first row Show all	>Lus10033344 pacid=23172119 polypeptide=Lus10033344 locus=Lus10033344.g ID=Lus10033344.BGIv1.0 annot-version=v1.0 MTTTTNLQLLITALTFFLTFSPSLQLRPPSTPARNNSATTAPAPAGTRWAILVAGSNSFDNYRHQADVCHAYRVLKRGGLKDDNIVVFMYDDIAFDEENP RPGVVINKPTGDDVYSGVPKDYTKENCTADNLYAVILGNQSALTGGSGKVVNSSPDDTVFIYYADHGSPGVVGMPVGGRVYARELMDVLQKKHSANGYKS MVIYMEACEAGSMFDGVLPNDINIYAVTASNPSESSYAFYCPDEYPTPPPDYYTCLGDLFSISWLEDTDLHDPRFETLDQQYQLVRRRTGKDYGVTEVQS SHVMQYGDITIAQQLLSVYIGGGGSDPSVAVNSINHPGNYSTNSKAISQRDILLSHLEQQLKIAAEGSQEKAEAQEKLNNEVFNRKRADETMSRIGTMVF GVESADNLINFVRPSGQPLVDDWDCFKSFVEKYEELCGKMTVYGRKHSRGLANMCNAGVTLHQLTSACSDVCHSIIT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25940		ALPHAVPE, ALPHA...	alpha-vacuolar processing enzy...		Lus10033344 [exp]	0	1
AT5G51030			NAD(P)-binding Rossmann-fold s...		Lus10032524 [exp]	2.6	1.0000
AT4G34540			NmrA-like negative transcripti...		Lus10012146 [exp]	5.3	1.0000
					Lus10032828 [exp]	5.7	1.0000
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10033306 [exp]	6.9	1.0000
					Lus10000273 [exp]	8.0	1.0000
					Lus10032314 [exp]	8.7	0.9354
AT1G17930			Aminotransferase-like, plant m...		Lus10001981 [exp]	9.2	1.0000
AT2G01050			zinc ion binding;nucleic acid ...		Lus10032865 [exp]	9.8	0.7468
AT1G04670			unknown protein		Lus10002298 [exp]	9.8	1.0000
					Lus10004853 [exp]	10.4	1.0000

Compare expression of checked genes

Lus10033344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.