Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78920 1006 / 0 AtVHP2;1, AVPL1, AVP2 vacuolar H+-pyrophosphatase 2, VACUOLAR-PYROPHOSPHATASE LIKE PROTEIN 1, vacuolar H+-pyrophosphatase 2, vacuolar H+-pyrophosphatase 2 (.1), vacuolar H+-pyrophosphatase 2 (.2) AT1G16780 1002 / 0 AtVHP2;2, AVPL1 Inorganic H pyrophosphatase family protein (.1) AT1G15690 300 / 2e-89 FUGU5, AtVHP1;1, AVP-3, ATAVP3, AVP1 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034800 [exp] 1146 / 0 AT1G16780 1434 / 0.0 Inorganic H pyrophosphatase family protein (.1) Lus10038111 [exp] 312 / 7e-94 AT1G15690 1385 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10039977 [exp] 307 / 4e-92 AT1G15690 1381 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10008828 [exp] 303 / 2e-91 AT1G15690 697 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10038114 [exp] 300 / 7e-91 AT1G15690 1170 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10008044 [exp] 171 / 2e-45 AT1G15690 561 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10008042 [exp] 129 / 2e-30 AT1G15690 422 / 1e-134 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G254200 [exp] 1017 / 0 AT1G16780 1266 / 0.0 Inorganic H pyrophosphatase family protein (.1) Potri.008G003502 [exp] 400 / 1e-133 AT1G16780 477 / 3e-164 Inorganic H pyrophosphatase family protein (.1) Potri.006G063000 [exp] 307 / 4e-92 AT1G15690 1336 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.013G009400 [exp] 300 / 2e-89 AT1G15690 1237 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.005G018700 [exp] 299 / 2e-89 AT1G15690 1248 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.018G119500 [exp] 295 / 9e-88 AT1G15690 1367 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03030 [flax] [poplar] H_PPase Inorganic H+ pyrophosphatase
Representative CDS sequence Show only first row Show all	>Lus10033345 pacid=23172065 polypeptide=Lus10033345 locus=Lus10033345.g ID=Lus10033345.BGIv1.0 annot-version=v1.0 ATGGACGCACGGAATATGCCAATCGGCACATTTTTCTGCCCACAGACCAAGAGAGCGAGGAGGAAGGAGACGGCAAACAAACAGAGAGGAAGAGGAACAG GAATCCAGACTTCGAGGGTTGGACAGAGCTTTGATACTGTTGAAAGGTCTCCTCATCGGAGAGAGCTCTCTGGTCAACGGCGGTTAATTTTTGCATCCCG CTCTTCTCTGCATTTCCTAGGGGGCGATTTGCCCCAAAACACTGATAGCCTTTTTGCTACGGTGCGAAGAGTGAGTTCCTCCAGTGCAATGATGATGGGG GAGGATGTTGAGGGTGGTAACTTGGGGTCATATGCTGAGAGGCCACGGACTTTCCCCAATATGCGAAACAAAACTTATACCCCACTGGTCTTTCGGATTC TTATGGGAATTAATGTCCGTGTTCTATTTATACTTTTGTTATTGGCCTTCGCGGTGGTTTTTTACATTGGAGCAAGCACTTCTGGAATCATTGTGTTTGT ATTCACAGTGTGTATCATTAGCTTCCTTCTATCAGTTTATCTTGCCAAGTGGGTACTCTCGAAGGACGAGGGACCTCCTGAAATGGCTCAGATATCAGAT GCCATACGGGAAGGAGCAGAAGGTTTCTTCAGGACACAGTATGGAACTATATCTAAGATGGCAATGTTACTTGCACTAGTGATCCTATGCATTTATTTGT TCCGCAGCACAACTCCTGAACAAGAAGCTTCTGGCGTAGGGAGATCAGTAACCGCATACATCACTGTTGCTTCATTTCTTTTAGGAGCTCTGTGTTCAGG TGTTGCTGGTTATGTTGGGATGTGGGTCTCAGTTCGTGCAAATGTAAGGGTGTCTAGTGCTGCAAGACGGTCAGCAAGAGAGGCACTGCAGATAGCTGTT CGTGCTGGTGGTTGTTCTGCTATGGTGGTTGTTGGAATGGCTGTAATAGGAATAGCCATCCTTTATTCCACTTTCTATGTCTGGTTGGGAGTGGATTCCC CTGGTTCGATGAAGGTTACAGAATTGCCTCTTCTGCTAGTCGGATATGGTTTTGGAGCCTCCTTTGTTGCTCTCTTTGCTCAGTTAGGTGGTGGAATATA CACAAAGGCTGCTGATGTTGGGGCTGATCTTGTCGGAAAAGTAGAGCAAGGAATACCTGAAGATGATCCTAGGAACCCTGCAGTCATTGCTGATTTGGTT GGAGACAATGTTGGAGATTGTGCTGCTCGAGGTGCTGATCTGTTTGAAAGCATAGCTGCTGAAATAATTAGTGCCATGATACTTGGTGGAACAATGGCAA AGCGTTGCAAACTTGAAAGCAAGAGCACTCGCAGCTCAGGTTTGAAGTCTGTTATTGAGGATCCAATGGCAATTCTTCAGAAAGGATACTCTATTACAGT AGTCTTGGCTGTTCTTACATTTGGTGCGTCAACCCGTTGGATGCTGTACACTGAGCAAGCACCTTCAGCCTGGTTTAACTTTGCCCTGTGTGGATTGGTT GGCATTATCACTGCCTATGTGTTCGTCTGGATCACCAAGTATTACACTGACTACAAATATGAGCCTGTACGGTCATTAGCTTTGGCCAGTTCCACAGGCC ATGGGACTAATATAATTGCAGGAGTTAGTTTGGGTCTGGAATCAACAGCTCTTCCTGTTCTGGTCATTAGTGTATCAATCGTGTCATCCTTTTGGCTTGG TCGCACCTCAGGTCTGGTAGATGAATCTGGAAACCCTGCTGGTGGGTTGTTTGGTACAGCGGTGGCAACAATGGGAATGCTTAGCACTGCTGGTTATGTA TTAACCATGGATATGTTTGGCCCTATAGCTGACAATGCTGGTGGCATTGTCGAGATGAGTCAGCAGCCAGAAAGTGTTCGAGAAATCACTGATGTGTTAG ATGCTGTTGGAAATACTACAAAAGCTACAACAAAAGGATTTGCCATTGGATCGGCTGCTCTTGCATCTTTCCTTTTGTTTAGTGCTTATATGGATGAGGT TTCTACATTTGCTGAAGAACCTTTGAAACAGGAGTACACGGAAAAGCCAGATTATGGCCGCTGTGTTGCAATTGTGGCATCTGCATCTTTGAGAGAAATG ATAAAACCCGGTGCTTTGGCTATTATATCTCCTATGGTAGTGGGGAGCTTTTGCCTTGTGACACACTTGACGAAAGATTTGGGGTTTTATTTGGGTTTCA GGGGTTGTGTTCCGAATCCTAGGGTACTATACGGGACAGCCACTTCTAGGAGCACAGGTTGTGGCAGGGAACTTGTTTGTTGCTCGCATGGTTCGTTCTT TGAGGTGTCTGCTTCTCCTACCACCGCGGTCAACACAGCTGGTGGTGCATGGGACAACGCCAAGAAGTACATCGAGACAGGAGTTCTTGGAGGTAAAGGG AGTGAGTGCCACAAAGCTGCAATTACAGGGGACACTGTGGGAGATCCTTTTAAAGACACAGCAGGGCCGTCGATTCACGTCCTCATAAAAATGTTGGCGA CGATAACGCTAGTGATGGCTCCCATCTTTCTTGAAGGAAAGAGTGTGGGTTGA
AA sequence Show only first row Show all	>Lus10033345 pacid=23172065 polypeptide=Lus10033345 locus=Lus10033345.g ID=Lus10033345.BGIv1.0 annot-version=v1.0 MDARNMPIGTFFCPQTKRARRKETANKQRGRGTGIQTSRVGQSFDTVERSPHRRELSGQRRLIFASRSSLHFLGGDLPQNTDSLFATVRRVSSSSAMMMG EDVEGGNLGSYAERPRTFPNMRNKTYTPLVFRILMGINVRVLFILLLLAFAVVFYIGASTSGIIVFVFTVCIISFLLSVYLAKWVLSKDEGPPEMAQISD AIREGAEGFFRTQYGTISKMAMLLALVILCIYLFRSTTPEQEASGVGRSVTAYITVASFLLGALCSGVAGYVGMWVSVRANVRVSSAARRSAREALQIAV RAGGCSAMVVVGMAVIGIAILYSTFYVWLGVDSPGSMKVTELPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLV GDNVGDCAARGADLFESIAAEIISAMILGGTMAKRCKLESKSTRSSGLKSVIEDPMAILQKGYSITVVLAVLTFGASTRWMLYTEQAPSAWFNFALCGLV GIITAYVFVWITKYYTDYKYEPVRSLALASSTGHGTNIIAGVSLGLESTALPVLVISVSIVSSFWLGRTSGLVDESGNPAGGLFGTAVATMGMLSTAGYV LTMDMFGPIADNAGGIVEMSQQPESVREITDVLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVSTFAEEPLKQEYTEKPDYGRCVAIVASASLREM IKPGALAIISPMVVGSFCLVTHLTKDLGFYLGFRGCVPNPRVLYGTATSRSTGCGRELVCCSHGSFFEVSASPTTAVNTAGGAWDNAKKYIETGVLGGKG SECHKAAITGDTVGDPFKDTAGPSIHVLIKMLATITLVMAPIFLEGKSVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Lus10033345 [exp]	0	1
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Lus10037556 [exp]	2.2	0.8611
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10017343 [exp]	8.7	0.7498
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Lus10016910 [exp]	11.9	0.8371
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001291 [exp]	14.1	0.8376
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10036156 [exp]	15.0	0.8367
AT5G11040		AtTRS120	TRS120 (.1)		Lus10008127 [exp]	15.5	0.8336
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10039696 [exp]	15.8	0.8088
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10029001 [exp]	21.4	0.8181
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10041419 [exp]	25.4	0.7432
AT5G53460		GLT1	NADH-dependent glutamate synth...		Lus10000390 [exp]	26.5	0.7468

Compare expression of checked genes

Lus10033345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.