Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16790 135 / 2e-41 ribosomal protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034801 [exp] 239 / 2e-82 AT1G16790 140 / 1e-43 ribosomal protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G254100 [exp] 158 / 2e-50 AT1G16790 155 / 1e-49 ribosomal protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033346 pacid=23172055 polypeptide=Lus10033346 locus=Lus10033346.g ID=Lus10033346.BGIv1.0 annot-version=v1.0 ATGCAACAACCGGCAACCCCGAATTCAGTCAGGCCAAACGAAGGCGGTGGAGGCAAGCCTTCGACGAAGAGGAAGCCGCCAACGCCCAAGGAGCTGATAT CCCACTACGAGTCACAAGGGATGGAGCCCCAAGAGGCTTCCGCCAAGGTAATCGAAGACCTCCAGAAGGTTCTATACAGGGTTGTCTCCGCCAACAGCAA GGGGAAAAAGAAAGACAAGGCTTCGTCGGAGGTTTCCCGGAAGATTGACGCGGTGAGCAACAGAGTGGCGGTGCTGGACATGAAGGTGGAGTCCAAGCCT GGCTACCTCGGAGCTTTCAGCGTCGGAATCGCTTCGGGTGTGGCTCTGCGAGGGATTGAGAAGGTTTTGCCCAATGTTTGGGAAGGGATTGGTCAAATTT GGAGCGCTGTTGGAAGTGTTACCACTAAGCCTCCATCTTCGTGA
AA sequence Show only first row Show all	>Lus10033346 pacid=23172055 polypeptide=Lus10033346 locus=Lus10033346.g ID=Lus10033346.BGIv1.0 annot-version=v1.0 MQQPATPNSVRPNEGGGGKPSTKRKPPTPKELISHYESQGMEPQEASAKVIEDLQKVLYRVVSANSKGKKKDKASSEVSRKIDAVSNRVAVLDMKVESKP GYLGAFSVGIASGVALRGIEKVLPNVWEGIGQIWSAVGSVTTKPPSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16790			ribosomal protein-related (.1)		Lus10033346 [exp]	0	1
AT1G04940		AtTic20-I, atTI...	translocon at the inner envelo...		Lus10010636 [exp]	3.9	0.9296
AT4G36390			Methylthiotransferase (.1)		Lus10041793 [exp]	4.0	0.9290
AT4G36390			Methylthiotransferase (.1)		Lus10028344 [exp]	5.2	0.9154
AT4G38160		PDE191	pigment defective 191, Mitocho...		Lus10026571 [exp]	5.6	0.9330
AT3G21300			RNA methyltransferase family p...		Lus10000172 [exp]	6.0	0.9105
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10039092 [exp]	10.9	0.9314
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10024852 [exp]	13.3	0.8662
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10015677 [exp]	16.7	0.9279
AT3G62030		CYP20-3, ROC4	cyclophilin 20-3, rotamase CYP...		Lus10038015 [exp]	16.9	0.8929
AT1G69200		FLN2	fructokinase-like 2 (.1)		Lus10036920 [exp]	20.5	0.8266

Compare expression of checked genes

Lus10033346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.