Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64270 2052 / 0 splicing factor, putative (.1) AT1G25490 48 / 5e-05 REGA, PR65, EER1, ATBBETABETA, RCN1 ROOTS CURL IN NPA, ENHANCED ETHYLENE RESPONSE 1, ARM repeat superfamily protein (.1) AT3G25800 47 / 7e-05 PP2AA2, PR65, PDF1 protein phosphatase 2A subunit A2 (.1.2) AT1G13320 47 / 9e-05 PR65, PDF2, PP2AA3 protein phosphatase 2A subunit A3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034803 [exp] 2132 / 0 AT5G64270 1985 / 0.0 splicing factor, putative (.1) Lus10034299 [exp] 45 / 0.0004 AT3G25800 1102 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Lus10035038 [exp] 45 / 0.0006 AT3G25800 1134 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Lus10021695 [exp] 44 / 0.0007 AT3G25800 1129 / 0.0 protein phosphatase 2A subunit A2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G050800 [exp] 2129 / 0 AT5G64270 2020 / 0.0 splicing factor, putative (.1) Potri.001G310900 [exp] 2111 / 0 AT5G64270 2001 / 0.0 splicing factor, putative (.1) Potri.012G062700 [exp] 45 / 0.0005 AT3G25800 1116 / 0.0 protein phosphatase 2A subunit A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0462 [flax] [poplar] TPA-repeat PF08920 [flax] [poplar] SF3b1 Splicing factor 3B subunit 1 CL0020 [flax] [poplar] TPR PF02985 [flax] [poplar] HEAT HEAT repeat
Representative CDS sequence Show only first row Show all	>Lus10033347 pacid=23172143 polypeptide=Lus10033347 locus=Lus10033347.g ID=Lus10033347.BGIv1.0 annot-version=v1.0 ATGGATCCAGAGATAGCTAAGACGCAGGAGGAGAGGAAGAGGATGGAGCAGGAGCTCGCCTCCCTTACTTCGCTCAACTACGATAAGGACCTCTACGGCG GAACAGATAAGGACTCCTACGTCACCTCCATCCCCGTCAACGACGACGAAGACAACGACATCGCCGACAATGAAGTCGCTCGCAAGCTCGCCTCCTATAC CGCTCCCAAGTCGCTTCTCAAGGAGATGCCTCGCGGCGGCGATGACGATGATGACGGCGGTTTCAAGAAGCCTTCGAGGATTATCGATCGCGAGGATGAT TACCGGCGCAGGAGATTGAATAGGGTGATATCTCCGGACAGACATGATGCGTTTGCGATGGGGGAGAAGACGCCGGATCCGTCAGTTAGGACTTACGCGG AAGTTATGAGGGAGGAGGCTCTGAAGAGGGAGAGAGAGGCGACGTTGAGGGAAATTTCAAAGAAGAAGAAGCAGGAGGAGGAAGATGCTAAAGAAGCTAA GGACTCTGAAGTAACTAAGAAGGAGCCAGCTGCACCTGCTACAACTGCAGCAGCTCCGAAGAGGAGGAATAGATGGGACCAGTCACAGGAAGGTGAAGCT TCTGCTGGGGCTGCTAAGAAAGCTAAGACGAGCTCTGATTGGGATTTACCAGACGCAACTCCTGGGATTGGAAGGTGGGATGCTGCTACTCCCACACCTG GTAGAGTTGGGGATGCGACCCCCTCGATGGGGAGGAGGAATAGATGGGATGAAACCCCAACTCCCGGAAGGGTAGCTGATTCGGATGCAACTCCTTCTGG TGGTGTTACTCCTGGTGCTACACCTGCTGGGGTGACTTGGGATGCAACTCCCAAAGGGTTGGCCACACCGACTCCTAAAAAGCAAAGATCACGATGGGAT GAAACTCCTGCAACTATGGGAAGTGCGACTCCGATGGCTGGGGCTACACCTGCTGCTGCATATACCCCTGGTGTTACTCCTGTTGGTGGGATTGAATTGG CCACCCCAACTCCGAGTCTCATTCAACGTGGTGCTCTTACTCCGGAGCAGTATAATCTATTGAGATGGGAGAAGGATATTGAAGAGAGGAATAGACCTTT GACTGATGAGGAACTAGATGCTATATTTCCTCTGGAAGGATATAAGATTTTGGAGCCACCGGCATCTTATGTTCCCATTAGGACTCCTGCCAGGAAATTG TTGGCTACACCCACTCCTATGGGTACTCCGCTTTATGCTATACCTGAAGAGAATAGGGGGCAGCAATATGATGTGCCGAAAGAAGCTCCTGGTGGGTTGC CCCATATGAAGCCGGAGGATTATCAGTACTTTGGAGCCTTGTTAAATGAGGACGATGAGGAAGAGTTGACACCTGATGAACAAAAAGAGCGGAAGATTAT GAAGCTGTTGTTGAAGGTTAAGAATGGAACACCGCCTCAGCGTAAGACTGCTTTGCGACAGTTGACAGATAAGGCAAGAGAGTTTGGTGCTGGCCCACTG TTCAACAGGATTCTGCCTTTGCTTATGCAGCCCACTTTGGAGGATCAGGAGAGACATCTTCTAGTCAAGGTGATTGATAGGGTTTTGTATAAGTTGGATG AGCTGGTTAGGCCTTACGTGCACAAGATTCTTGTTGTTATTGAGCCGTTGCTTATTGATGAAGATTATTATGCCCGTGTTGAAGGAAGGGAGATCATTTC AAATTTGAGTAGAGCTGCTGGTTTGGCAACTATGATTGCTGCTATGCGTCCTGATATTGATAATATTGATGAATATGTTAGGAATACAACTGCTAGAGCT TTCAGTGTTGTGGCTTCTGCTCTTGGTATTCCAGCACTGCTGCCTTTTCTGAAAGCTGTGTGTCAGAGTAAGAAATCGTGGCAAGCTCGTCACACTGGTA TCAAGATTGTGCAGCAGATTGCTATTCTCATTGGGTGTGCTGTTCTTCCTCATTTAAGGTCTCTGGTAGAAATTATAGAGCATGGACTAATTGACGAGAA TCCGAAAGTGAGAACTATCACTGCATTGTCTTTGGCTGCCCTTGCTGAGGCTTCTGCACCTTATGGTATTGAAAGCTTCGACTCTGTTCTGAAACCCTTG TGGAAAGGAATAAGGTCACACCGCGGAAAGGTCTTGGCTGCCTTCTTGAAGGCAATTGGTTTTATCATTCCTCTGATGGATGCTATGTATGCCTCTTACT ACACTAAGGAAGTGATGTACATTCTCATCCGTGAGTTTCAGTCTCCTGATGAAGAAATGAAGAAGATTGTTCTGAAAGTGGTGAAGCAATGTGTCAGCAC TGAGGGTGTGGAACCAGATTACATCCGTAATGATATTCTTCCAGAATTCTTTAAGAACTTCTGGGTTAGAAGGATGGCATTGGATAGAAGAAACTACAAG CAACTTGTAGAAACCACAGTGGAGATTGCTAACAAGGTTGGTGTTAAAGATATTGTTGGGAGGATTGTTGAGGATCTTAAAGACGAGAGTGAGCCTTATC GTCGGATGGTTATGGAAACAATCGAGAAGGTGGTTACGAACTTGGGTTCTTCTGACATTGATGCTAGGTTGGAAGAGCTTTTGATAGATGGTATTCTGTA TGCTTTCCAAGAACAGACTAGTGATGATGCCAATGTCATGCTTAATGGGTTCGGAGCAGTTGTCAACTCTCTTGGGCAGAGAGTGAAACCTTATCTCCCT CAGATTTGTGGTACCATAAAGTGCCGGCTGAACAACAAAAGTGCGAAGGTGAGACAACAAGCAGCTGATCTTATTTCTAGGATTGCTGTTGTGATGAAGC AGTGCCATGAGGAGCAGCTTATGGGTCATCTTGGTGTTGTCTTGTACGAGTATTTGGGAGAAGAATACCCTGAAGTGTTGGGATCAATCCTGGGAGCTCT GAAGGCTATTGTCAATGTGATTGGTATGACAAAAATGACTCCTCCCATCAAGGACTTGCTTCCAAGGCTGACACCAATTTTGAAGAATAGACATGAGAAA GTCCAGGAGAACTGCATTGATCTTGTTGGCCGTATTGCTGATCGTGGTGCTGAGTTTGTCCCAGCTAGAGAATGGATGAGGATCTGCTTTGAACTGCTTG AGATGCTGAAGGCGCACAAGAAGGGTATTCGTAGAGCTACCGTGAACACTTTCGGGTATATCGCCAAAGCCATCGGTCCACAAGATGTTCTTGCAACTTT GCTGAACAATCTCAAGGTCCAGGAGCGCCAGAATCGTGTGTGTACCACTGTTGCTATTGCTATAGTTGCAGAAACTTGCTCGCCCTTCACAGTGCTTCCT GCCTTGATGAACGAGTACCGTGTTCCAGAGCTCAATGTCCAGAATGGTGTTTTGAAGTCCCTATCTTTTCTGTTCGAGTACATTGGCGAAATGGGTAAAG ACTACATCTATGCAGTAACGCCATTGCTCGAGGATGCCCTCATGGACAGGGACTTGGTTCACAGGCAGACAGCAGCTTCAGCTGTCAAGCATATGGCACT TGGCGTTGCCGGGTTGGGTTGCGAGGATGCTCTAGTTCACCTGCTCAACTTTGTGTGGCCGAACATATTTGAGACTTCTCCTCACGTGATAAATGCTGTA ATGGAAGCCATAGAAGGAATGAGGGTAGCTCTGGGTGCTGCCGTTGTGTTGAACTATTGTCTGCAGGGGCTTTTCCACCCAGCTCGGAAAGTGCGGGAAG TGTACTGGAAGATCTACAACTCTCTTTACATTGGCGCACAGGACACGCTTGTGGCTGCTTATCCAGTGCTGGATGATGAGGAGAACAACGTATATAGCAG GCCTGAGTTGGTGATGTTCGTATGA
AA sequence Show only first row Show all	>Lus10033347 pacid=23172143 polypeptide=Lus10033347 locus=Lus10033347.g ID=Lus10033347.BGIv1.0 annot-version=v1.0 MDPEIAKTQEERKRMEQELASLTSLNYDKDLYGGTDKDSYVTSIPVNDDEDNDIADNEVARKLASYTAPKSLLKEMPRGGDDDDDGGFKKPSRIIDREDD YRRRRLNRVISPDRHDAFAMGEKTPDPSVRTYAEVMREEALKREREATLREISKKKKQEEEDAKEAKDSEVTKKEPAAPATTAAAPKRRNRWDQSQEGEA SAGAAKKAKTSSDWDLPDATPGIGRWDAATPTPGRVGDATPSMGRRNRWDETPTPGRVADSDATPSGGVTPGATPAGVTWDATPKGLATPTPKKQRSRWD ETPATMGSATPMAGATPAAAYTPGVTPVGGIELATPTPSLIQRGALTPEQYNLLRWEKDIEERNRPLTDEELDAIFPLEGYKILEPPASYVPIRTPARKL LATPTPMGTPLYAIPEENRGQQYDVPKEAPGGLPHMKPEDYQYFGALLNEDDEEELTPDEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPL FNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSRAAGLATMIAAMRPDIDNIDEYVRNTTARA FSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLIDENPKVRTITALSLAALAEASAPYGIESFDSVLKPL WKGIRSHRGKVLAAFLKAIGFIIPLMDAMYASYYTKEVMYILIREFQSPDEEMKKIVLKVVKQCVSTEGVEPDYIRNDILPEFFKNFWVRRMALDRRNYK QLVETTVEIANKVGVKDIVGRIVEDLKDESEPYRRMVMETIEKVVTNLGSSDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLP QICGTIKCRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEK VQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNFVWPNIFETSPHVINAV MEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDTLVAAYPVLDDEENNVYSRPELVMFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64270			splicing factor, putative (.1)		Lus10033347 [exp]	0	1
AT5G64270			splicing factor, putative (.1)		Lus10034803 [exp]	1.0	0.9814
AT3G54460			SNF2 domain-containing protein...		Lus10024159 [exp]	4.6	0.9541
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10035106 [exp]	6.2	0.9632
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Lus10009490 [exp]	6.9	0.9440
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Lus10009816 [exp]	6.9	0.9499
AT2G17930			Phosphatidylinositol 3- and 4-...		Lus10041910 [exp]	7.7	0.9539
AT4G24680		MOS1	modifier of snc1 (.1)		Lus10001246 [exp]	8.1	0.9470
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Lus10011692 [exp]	8.3	0.9365
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Lus10007793 [exp]	10.4	0.9486
AT1G06230		GTE4	global transcription factor gr...		Lus10033624 [exp]	11.4	0.9350

Compare expression of checked genes

Lus10033347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.