Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24400 147 / 9e-45 SAUR-like auxin-responsive protein family (.1) AT4G31320 130 / 5e-38 SAUR-like auxin-responsive protein family (.1) AT3G43120 79 / 1e-18 SAUR-like auxin-responsive protein family (.1) AT5G20810 77 / 9e-18 SAUR-like auxin-responsive protein family (.1.2) AT4G34750 70 / 3e-15 SAUR-like auxin-responsive protein family (.1.2) AT3G20220 67 / 2e-14 SAUR-like auxin-responsive protein family (.1) AT3G20210 69 / 1e-13 DELTAVPE, DELTA-VPE delta vacuolar processing enzyme (.1.2) AT1G56150 65 / 1e-13 SAUR-like auxin-responsive protein family (.1) AT4G36110 63 / 6e-13 SAUR-like auxin-responsive protein family (.1) AT1G79130 62 / 1e-12 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035716 [exp] 162 / 5e-50 AT2G24400 157 / 9e-49 SAUR-like auxin-responsive protein family (.1) Lus10037302 [exp] 150 / 4e-44 AT2G24400 150 / 2e-44 SAUR-like auxin-responsive protein family (.1) Lus10026977 [exp] 116 / 8e-33 AT2G24400 184 / 1e-59 SAUR-like auxin-responsive protein family (.1) Lus10034888 [exp] 74 / 2e-16 AT5G20810 210 / 2e-70 SAUR-like auxin-responsive protein family (.1.2) Lus10042374 [exp] 66 / 7e-14 AT5G10990 125 / 8e-38 SAUR-like auxin-responsive protein family (.1) Lus10031178 [exp] 65 / 4e-13 AT1G56150 128 / 1e-38 SAUR-like auxin-responsive protein family (.1) Lus10026297 [exp] 65 / 4e-13 AT5G10990 125 / 2e-37 SAUR-like auxin-responsive protein family (.1) Lus10012189 [exp] 62 / 1e-12 AT4G34760 169 / 3e-56 SAUR-like auxin-responsive protein family (.1) Lus10026296 [exp] 62 / 1e-12 AT4G34760 133 / 4e-42 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G253800 [exp] 127 / 5e-37 AT2G24400 142 / 4e-43 SAUR-like auxin-responsive protein family (.1) Potri.008G003900 [exp] 124 / 1e-36 AT2G24400 110 / 1e-31 SAUR-like auxin-responsive protein family (.1) Potri.006G278100 [exp] 117 / 4e-33 AT2G24400 179 / 5e-58 SAUR-like auxin-responsive protein family (.1) Potri.018G063400 [exp] 83 / 5e-20 AT5G20810 219 / 3e-74 SAUR-like auxin-responsive protein family (.1.2) Potri.006G137200 [exp] 78 / 7e-18 AT5G20810 201 / 1e-66 SAUR-like auxin-responsive protein family (.1.2) Potri.004G164300 [exp] 69 / 1e-14 AT5G10990 170 / 3e-55 SAUR-like auxin-responsive protein family (.1) Potri.009G125900 [exp] 66 / 9e-14 AT5G10990 157 / 5e-50 SAUR-like auxin-responsive protein family (.1) Potri.001G060400 [exp] 64 / 1e-12 AT5G50760 71 / 5e-15 SAUR-like auxin-responsive protein family (.1) Potri.005G096400 [exp] 63 / 1e-12 AT3G12830 164 / 2e-53 SAUR-like auxin-responsive protein family (.1) Potri.004G164400 [exp] 62 / 1e-12 AT4G34760 182 / 4e-61 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10033348 pacid=23172259 polypeptide=Lus10033348 locus=Lus10033348.g ID=Lus10033348.BGIv1.0 annot-version=v1.0 ATGGAATATTCATATTCACGCAGTAGCAGTAGCAGTAGCAGCAAGAAGAAACCAACCAACAACAATAAGATCAGCGACGTGGTCAGCCTCCAACGCGTCC TGAAGAAATGGAAACGCCTCGCCGCCTCAGCCTCCGCCGCCGCTTCTTGCTCTCCTCCTCCTCCTGCTTCTTCTTCCGGCAGCAGAAGCAACAAGAAAAA GAGCATCAATTTCATGAAGCGGACGTTCTCTTTCAATGACGTGGCGGCGGTGCAGAGAGGGCGGGTGGCTATGAGCGTGGGGAAGGAGGAGAAGAGGTAC GAGGTCCCCACCGAGTATCTGGCCCACCAGGCGTTCAGGGTGTTGCTGAGGGACGCGGAGGAGGAGTTCGGGTTCCAGCACGAAGGGGTGCTCCGTATCC CCTGTGAGGTCGCGGCGTTCGAAAGGATTCTGAAGGCCGTGAGAGATAAAACGGCGTCGGATCATGCAGGGGAATGGGTTTCTGACGATGAGGAAGAGGA GGAGCAGCACCATCAGTTTGGGTTCCCGGCGTCTCCTGTTTGTGCTGCTGGGTTTTGCTCCTCGCCGTCTGATTCGGATCACTACAACCACCCATCTGAG TCTGATCAAATTTGGAGATAA
AA sequence Show only first row Show all	>Lus10033348 pacid=23172259 polypeptide=Lus10033348 locus=Lus10033348.g ID=Lus10033348.BGIv1.0 annot-version=v1.0 MEYSYSRSSSSSSSKKKPTNNNKISDVVSLQRVLKKWKRLAASASAAASCSPPPPASSSGSRSNKKKSINFMKRTFSFNDVAAVQRGRVAMSVGKEEKRY EVPTEYLAHQAFRVLLRDAEEEFGFQHEGVLRIPCEVAAFERILKAVRDKTASDHAGEWVSDDEEEEEQHHQFGFPASPVCAAGFCSSPSDSDHYNHPSE SDQIWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24400			SAUR-like auxin-responsive pro...		Lus10033348 [exp]	0	1
AT5G25840			Protein of unknown function (D...		Lus10000571 [exp]	1.7	0.9676
AT5G25840			Protein of unknown function (D...		Lus10006044 [exp]	3.2	0.9404
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10014606 [exp]	3.5	0.9537
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032074 [exp]	3.9	0.9480
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032073 [exp]	5.3	0.9464
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10030975 [exp]	5.3	0.9272
AT3G03190		ATGSTF6, ATGSTF...	ARABIDOPSIS GLUTATHIONE-S-TRAN...		Lus10040393 [exp]	6.0	0.9292
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10024328 [exp]	7.2	0.8698
					Lus10021242 [exp]	8.0	0.9142
					Lus10028607 [exp]	8.4	0.9036

Compare expression of checked genes

Lus10033348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.