Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012311 [exp] 203 / 3e-60 AT5G36930 354 / 6e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10040576 [exp] 177 / 5e-51 AT1G27180 355 / 3e-103 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10000423 [exp] 164 / 2e-46 AT1G27180 338 / 5e-95 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007821 [exp] 137 / 5e-37 AT5G36930 339 / 4e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007830 [exp] 135 / 1e-36 AT5G36930 120 / 5e-28 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007823 [exp] 135 / 2e-36 AT1G27170 322 / 3e-92 transmembrane receptors;ATP binding (.1.2) Lus10007834 [exp] 123 / 4e-35 AT1G63740 37 / 0.009 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10007829 [exp] 129 / 2e-34 AT5G36930 330 / 2e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007822 [exp] 128 / 4e-34 AT4G11170 86 / 7e-17 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033349 pacid=23172107 polypeptide=Lus10033349 locus=Lus10033349.g ID=Lus10033349.BGIv1.0 annot-version=v1.0 ATGACGATAAAGTTTGTGATCTCGCCTGCAGCAACTAAGTTGAAATCGATGATGTCTTACTCCATGACGAGGATAATTATGGTTGAAGGTCGGAACACTA TGCTACCACCACCATCCCTCACTATCGTAGTCATTTCCCGTCTACAATCTGATCGAATCCCGAATCTGAAGAATCTGAAAAACTTGACTGAATTAAATCT TTTCGCTAGTCCTTATCTTGAAGAGATCCAAGGACTTGGAGGGCTGAAATCATTACAAATTCTCAAGATAGTTAGGATGGGAAAGTTAGCTCATATTGAC AGCCTTGGGAATCTCATGTCTTCTTCCGACTGCAAGTTGGCAGAGGTGGTGATAGACAGATTCCCGCTTCTTCGTGCATTAGAACAACATGATGATGTTG ATACTAATGATGCAGTACGAATTATCGAATCTTTGCTCAGCCTAAAGATCAAACAATGTCCATTAATGGATTGCAGATCAATACCCAAACTCTCCAAGTT TCCAAGACTTAGGGAGTTTTCAATTGAGGACATCGATGCGCACATCATGATGAATCAGCCAGCCTACAGCTGCTACTGGCAGGGATTGACAATCTTGGAG AGATGGTTGAATTGCGATTCTGCCATTTAG
AA sequence Show only first row Show all	>Lus10033349 pacid=23172107 polypeptide=Lus10033349 locus=Lus10033349.g ID=Lus10033349.BGIv1.0 annot-version=v1.0 MTIKFVISPAATKLKSMMSYSMTRIIMVEGRNTMLPPPSLTIVVISRLQSDRIPNLKNLKNLTELNLFASPYLEEIQGLGGLKSLQILKIVRMGKLAHID SLGNLMSSSDCKLAEVVIDRFPLLRALEQHDDVDTNDAVRIIESLLSLKIKQCPLMDCRSIPKLSKFPRLREFSIEDIDAHIMMNQPAYSCYWQGLTILE RWLNCDSAI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10033349 [exp]	0	1
AT2G01260			Protein of unknown function (D...		Lus10017987 [exp]	1.0	0.7849
AT2G14830			Regulator of Vps4 activity in ...		Lus10039808 [exp]	10.6	0.7035
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10023022 [exp]	24.1	0.6569
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10030505 [exp]	28.8	0.6500
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10024880 [exp]	30.4	0.6524
AT4G08850			Leucine-rich repeat receptor-l...		Lus10004046 [exp]	32.4	0.6746
AT5G12060			Plant self-incompatibility pro...		Lus10023195 [exp]	34.5	0.6399
AT1G76750			Protein of unknown function (D...		Lus10025591 [exp]	34.6	0.5592
AT5G17600			RING/U-box superfamily protein...		Lus10008458 [exp]	36.2	0.6399
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10023047 [exp]	37.8	0.6399

Compare expression of checked genes

Lus10033349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.