Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78910 612 / 0 Pseudouridine synthase family protein (.1) AT3G19440 244 / 2e-75 Pseudouridine synthase family protein (.1) AT1G76050 53 / 3e-07 Pseudouridine synthase family protein (.1.2) AT3G52260 47 / 3e-05 Pseudouridine synthase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034804 [exp] 832 / 0 AT1G78910 655 / 0.0 Pseudouridine synthase family protein (.1) Lus10002811 [exp] 263 / 2e-82 AT3G19440 445 / 1e-153 Pseudouridine synthase family protein (.1) Lus10027863 [exp] 255 / 1e-79 AT3G19440 424 / 1e-145 Pseudouridine synthase family protein (.1) Lus10005619 [exp] 54 / 2e-07 AT1G76040 773 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10017250 [exp] 52 / 8e-07 AT1G76050 531 / 0.0 Pseudouridine synthase family protein (.1.2) Lus10040385 [exp] 47 / 2e-05 AT3G52260 488 / 2e-173 Pseudouridine synthase family protein (.1.2.3) Lus10022437 [exp] 47 / 4e-05 AT5G51140 505 / 1e-177 Pseudouridine synthase family protein (.1.2) Lus10023503 [exp] 46 / 4e-05 AT3G52260 498 / 6e-178 Pseudouridine synthase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G228200 [exp] 656 / 0 AT1G78910 648 / 0.0 Pseudouridine synthase family protein (.1) Potri.009G095700 [exp] 276 / 1e-87 AT3G19440 483 / 2e-168 Pseudouridine synthase family protein (.1) Potri.002G016800 [exp] 56 / 2e-08 AT1G76050 504 / 1e-178 Pseudouridine synthase family protein (.1.2) Potri.015G101300 [exp] 43 / 0.0004 AT5G51140 512 / 0.0 Pseudouridine synthase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [flax] [poplar] PseudoU_synth PF00849 [flax] [poplar] PseudoU_synth_2 RNA pseudouridylate synthase
Representative CDS sequence Show only first row Show all	>Lus10033350 pacid=23172113 polypeptide=Lus10033350 locus=Lus10033350.g ID=Lus10033350.BGIv1.0 annot-version=v1.0 ATGATTCCTCCCTTCAAGGATGTAAAGCAATGGCGAATAGAAGTGCTCTCTACAGTGGAGCTTGCAGTTCGATTCTACTCTAGAATCGCTCCACCGCCGC CTGCCTATGCACAACCGGTCATCAGAGTTTCCAACAATATAGCTTATCTAGGTCCCCCTAAAGAAGGTCCAAAGCCCCGCCAGCTTCTTTCATTGCCTCC ATTTCCAGGGCTGCCTCTTCCTGGGAAGATCTTGCTCGGTGATCCTGGGCGTCTCACTGCCATCAGCTGGGTTAAGTATTACTTCAATGAGATGTGCGGT GAAAATATTGAATCCCATTTTAAGAAGGGCCTTGTTTATGTGGAATGCAAAACTTCTAACGACTCGATAGAATTGAAAGGATTGGAGAGATCGGTGAGAA AGATTAAGCCTCATGATGCAATGGAAGTGGGAGCAAAAATTCATGTCCCAGTATCAATTGCTGAGTCTAGAATCTCAAAGAGATTTGACACCATACCATG TGGTACTTTATACCCAAATGCAGATGAGATTGACTACTTGCAAAGGCTGGTGAAGTACAAGGATGCAGCACTTATCGTCCTAAATAAGCCGCCAAAATTG CCGGTCAAGGGTAGTATGCCTGTTCATAACAGTATGGATGCATTGGCTGCTGCCGCTTTGTCATATGATTACGACGAGGGTCCCAAGTTGGTTCACCGTC TTGATAGGGAAAGTAGTGGGCTCATCTTATTGGGGCGGACTCAAGAAAGTGTATCTTATCTTCAGTGGATATTCAGCAACCTGAGGAACGCAAAATCTCG ATCTCAGGTCTGGAATGATGCATGTGAAGCTACATACCAAAGGTACTGGGCTTTAGTTATAGGCTCCCCGATGGAGAAGGAAGGCGTGATTCGTGCTCCT CTTTCAAAGGTCCTTCTTGATGATGGAAAGACAGAGCGAATTATCCTGGCACGGGATTCTGGGTTTGAACCCTCTCAAGAGGCCATAACAGAATATCGAG TATTAGGTCCTATGATGAACGGGTGCTCTTGGCTCGAACTTCGTCCACTCACTAGCTGGAAGCACCAGCTTCGCGTCCACTGTGCTGAAGCGCTGGGTAC TCCGATCGTAGGGGACTATAAATATGGCTGGTTCGTGCACAAGAGATGGAGGCAAATGCCTCGAGTGGATATCGAGCCATCTTCAGGGAAACCATACAAG TTACGGAGGCCAGACGGCATAGATGTTCAGAAAGGAAGTGTACTGTCGAAAGTACCGCTGCTGCATCTCCATTGCAGGGAGATGGTCCTTCCCAACATTG CCAAGTTCATGAATATCTTAAATCAGAGATCAGATTCTCGTCAACGATCTGCAATGACAAGTGAACAAGCTGATGTCCTCCGGTTTGTGGGTGCAATGCC AAACCATATGAAAATTAGCTGGAATCTCATGTCATCTTATTTGGTGTGA
AA sequence Show only first row Show all	>Lus10033350 pacid=23172113 polypeptide=Lus10033350 locus=Lus10033350.g ID=Lus10033350.BGIv1.0 annot-version=v1.0 MIPPFKDVKQWRIEVLSTVELAVRFYSRIAPPPPAYAQPVIRVSNNIAYLGPPKEGPKPRQLLSLPPFPGLPLPGKILLGDPGRLTAISWVKYYFNEMCG ENIESHFKKGLVYVECKTSNDSIELKGLERSVRKIKPHDAMEVGAKIHVPVSIAESRISKRFDTIPCGTLYPNADEIDYLQRLVKYKDAALIVLNKPPKL PVKGSMPVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGLILLGRTQESVSYLQWIFSNLRNAKSRSQVWNDACEATYQRYWALVIGSPMEKEGVIRAP LSKVLLDDGKTERIILARDSGFEPSQEAITEYRVLGPMMNGCSWLELRPLTSWKHQLRVHCAEALGTPIVGDYKYGWFVHKRWRQMPRVDIEPSSGKPYK LRRPDGIDVQKGSVLSKVPLLHLHCREMVLPNIAKFMNILNQRSDSRQRSAMTSEQADVLRFVGAMPNHMKISWNLMSSYLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78910			Pseudouridine synthase family ...		Lus10033350 [exp]	0	1
AT1G78910			Pseudouridine synthase family ...		Lus10034804 [exp]	1.4	0.8838
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Lus10036365 [exp]	3.5	0.8532
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10021766 [exp]	4.5	0.8223
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10012931 [exp]	4.7	0.8660
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10012885 [exp]	5.7	0.8155
AT5G01230			S-adenosyl-L-methionine-depend...		Lus10021124 [exp]	8.1	0.7678
AT1G78010			tRNA modification GTPase, puta...		Lus10029578 [exp]	8.5	0.8302
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10028237 [exp]	9.9	0.7786
AT3G21480			BRCT domain-containing DNA rep...		Lus10038633 [exp]	10.7	0.8643
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10012908 [exp]	13.4	0.8366

Compare expression of checked genes

Lus10033350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.